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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039640 ID=TCONS_00039640|Name=TCONS_00039640|organism=Clytia hemisphaerica|type=transcript|length=1115bp
NGTATGAGCATTGATCAGCGATGCCATTAGTTCAGCACGAGGAAGTGTCA
AATCTTTTGGAACCATTCGTGAACGTGCAAACACCAATTGACAAGAGAAT
GTTCCATCCTTTCGAAGGAATCTAGCATAGATGCCAACACAGATAGTTGT
TTGACTGGAATCACCAAAATCCAAGGTTTCAACGTCAAGTGAGACTGCAT
CTTCTGGGACCACAAGGCGTTTGAATCTCAAATGATTGATTTCGGACATC
ATCTCAAAGTGGGATAACCAGACTGGTCTCAGTTCCTCTGGTATTGCATC
ATCCCAGCTGAGTTGGCGATCAGTTAATTCTCgtaaatcaattttcattg
CAGCTATCAATGGGACAATCTTTCCGGTTATGTCGAATATCTCTCCAACT
TTTGATAGACAGTGTCGACGTGTCAGAACATCAGGAATCAAATTGGTTGA
ATTGGAACTTTTCTTACCTTTACGTTTGGGCGCAAAGTTCAGATCTGGAA
TAGACAATAACAATTCGTCAGATTTGNTATGTCGAATATCTCTCCAACTT
TTGATAGACAGTGTCGACGTGTCAGAACATCAGGAATCAAATTGGTTGAA
TTGGAACTTTTCTTACCTCTACGTTTGGGCGCAAAGTTGAGATCTGGAAT
AGACAATGACAATTCGTCAGATTTGGAAAACCACTTCATTCCACCAACAC
CAACGGAAATGCCATCTTCAGTCAAATGTGATGGTGGGTTTTCTCCAGAA
ATTGTGATGCCTTTCAGATTGAAAGCACCTTTGGATGTTACAATTTGAAG
CTCATCAGCACGTTTGTAAGCTTCTTCTTTGGTGTCAGTTCCAGTAATGC
AATCATCCACATATACGTCTTTTTGAATGATTTGGTTGACTTCAGGGTAC
TCCTGGCTGTTCATTTCAGCAATACGTCTGAGAGCGAATTCCGATTGGTT
ACCACCTGATTTAATACCATAGATTAAAGTTTTGATAACTTTCTCTTTCG
GAATTTTGGTAGGATCCAATTCTTCATTCCATAGGTAACGCTGCAATGTC
CAATGATCTTGGTGTAGTTTGACAGTATTGTACATCTTGCTTACATCGCT
GTGGATACCTACAGG Run BLAST on NCBI protein sequence of TCONS_00039640-protein >TCONS_00039640-protein ID=TCONS_00039640-protein|Name=TCONS_00039640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
PVGIHSDVSKMYNTVKLHQDHWTLQRYLWNEELDPTKIPKEKVIKTLIYG
IKSGGNQSEFALRRIAEMNSQEYPEVNQIIQKDVYVDDCITGTDTKEEAY
KRADELQIVTSKGAFNLKGITISGENPPSHLTEDGISVGVGGMKWFSKSD
ELSLSIPDLNFAPKRRGKKSSNSTNLIPDVLTRRHCLSKVGEIFDIXNLT
NCYCLFQI Run BLAST on NCBI transcript from alignment at sc0002154:18081..19195 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039640 ID=TCONS_00039640|Name=TCONS_00039640|organism=Clytia hemisphaerica|type=transcript|length=1115bp|location=Sequence derived from alignment at sc0002154:18081..19195 (Clytia hemisphaerica)
CCTGTAGGTATCCACAGCGATGTAAGCAAGATGTACAATACTGTCAAACT
ACACCAAGATCATTGGACATTGCAGCGTTACCTATGGAATGAAGAATTGG
ATCCTACCAAAATTCCGAAAGAGAAAGTTATCAAAACTTTAATCTATGGT
ATTAAATCAGGTGGTAACCAATCGGAATTCGCTCTCAGACGTATTGCTGA
AATGAACAGCCAGGAGTACCCTGAAGTCAACCAAATCATTCAAAAAGACG
TATATGTGGATGATTGCATTACTGGAACTGACACCAAAGAAGAAGCTTAC
AAACGTGCTGATGAGCTTCAAATTGTAACATCCAAAGGTGCTTTCAATCT
GAAAGGCATCACAATTTCTGGAGAAAACCCACCATCACATTTGACTGAAG
ATGGCATTTCCGTTGGTGTTGGTGGAATGAAGTGGTTTTCCAAATCTGAC
GAATTGTCATTGTCTATTCCAGATCTCAACTTTGCGCCCAAACGTAGAGG
TAAGAAAAGTTCCAATTCAACCAATTTGATTCCTGATGTTCTGACACGTC
GACACTGTCTATCAAAAGTTGGAGAGATATTCGACATANCAAATCTGACG
AATTGTTATTGTCTATTCCAGATCTGAACTTTGCGCCCAAACGTAAAGGT
AAGAAAAGTTCCAATTCAACCAATTTGATTCCTGATGTTCTGACACGTCG
ACACTGTCTATCAAAAGTTGGAGAGATATTCGACATAACCGGAAAGATTG
TCCCATTGATAGCTGcaatgaaaattgatttacGAGAATTAACTGATCGC
CAACTCAGCTGGGATGATGCAATACCAGAGGAACTGAGACCAGTCTGGTT
ATCCCACTTTGAGATGATGTCCGAAATCAATCATTTGAGATTCAAACGCC
TTGTGGTCCCAGAAGATGCAGTCTCACTTGACGTTGAAACCTTGGATTTT
GGTGATTCCAGTCAAACAACTATCTGTGTTGGCATCTATGCTAGATTCCT
TCGAAAGGATGGAACATTCTCTTGTCAATTGGTGTTTGCACGTTCACGAA
TGGTTCCAAAAGATTTGACACTTCCTCGTGCTGAACTAATGGCATCGCTG
ATCAATGCTCATACN Coding sequence (CDS) from alignment at sc0002154:18081..19195 >TCONS_00039640 ID=TCONS_00039640|Name=TCONS_00039640|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0002154:18081..19195 (Clytia hemisphaerica)
CCTGTAGGTATCCACAGCGATGTAAGCAAGATGTACAATACTGTCAAACT
ACACCAAGATCATTGGACATTGCAGCGTTACCTATGGAATGAAGAATTGG
ATCCTACCAAAATTCCGAAAGAGAAAGTTATCAAAACTTTAATCTATGGT
ATTAAATCAGGTGGTAACCAATCGGAATTCGCTCTCAGACGTATTGCTGA
AATGAACAGCCAGGAGTACCCTGAAGTCAACCAAATCATTCAAAAAGACG
TATATGTGGATGATTGCATTACTGGAACTGACACCAAAGAAGAAGCTTAC
AAACGTGCTGATGAGCTTCAAATTGTAACATCCAAAGGTGCTTTCAATCT
GAAAGGCATCACAATTTCTGGAGAAAACCCACCATCACATTTGACTGAAG
ATGGCATTTCCGTTGGTGTTGGTGGAATGAAGTGGTTTTCCAAATCTGAC
GAATTGTCATTGTCTATTCCAGATCTCAACTTTGCGCCCAAACGTAGAGG
TAAGAAAAGTTCCAATTCAACCAATTTGATTCCTGATGTTCTGACACGTC
GACACTGTCTATCAAAAGTTGGAGAGATATTCGACATANCAAATCTGACG
AATTGTTATTGTCTATTCCAGATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039640-exon-sc0002154-1491911889:18081..19195 | TCONS_00039640-exon-sc0002154-1491911889:18081..19195 | Clytia hemisphaerica | exon |
| TCONS_00039640-exon-sc0002154-1510915933:18081..19195 | TCONS_00039640-exon-sc0002154-1510915933:18081..19195 | Clytia hemisphaerica | exon |
| TCONS_00039640-exon-sc0002154-1575043694:18081..19195 | TCONS_00039640-exon-sc0002154-1575043694:18081..19195 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002154 | supercontig | sc0002154:18081..19195 . |
Blast
The following BLAST results are available for this feature:
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