TCONS_00039639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039639
Unique NameTCONS_00039639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length624

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039639 ID=TCONS_00039639|Name=TCONS_00039639|organism=Clytia hemisphaerica|type=transcript|length=624bp
AGCAGGCTAAGTAAGCTATATGGTTATACATGTTTGAATATTTAGGAATT
GTTCAATAGAGTGAAGCAAACTCCATCATGgtctgaaaaatatatatctt
ttacaaagcattgtacttcttttttatctaagtaaCTCTTTTTCAAATAC
ACATGATCAAGAAGACCACCTGCCAAATGAGTAGGTTCATTCACTATCAG
TTTGTATGACGAGAGCACATCAGCAAGGTCTTCATTTGCAGCATCCAAAG
CATCAATATTGAAATCTCCAAGGATAATCTGTACTTCATCATATAAAAGT
GTTCTCAGTTCTTCAAGAAAAGTATTTCTTGAAAAGTTAGGTGGCTTGTA
CAAGAGTAGAATTGTAATAGGTTGCTCACTAAATGTCTCTTTTTTAAACA
TTATCTGTGTATAACCAGCTGCTTTTTGGCATTCTAAAATTTCTACTGAA
GAATTTGCACAACATGCAGTGTTTTGAAATCTATTGACTGAATTATTATT
gtaatcaattttgaaattttgcaaggaTTCATCAATGTCATTTGTTTCAC
TTGAAGGTGACAGTTGAGTTTCAGTAAGGCATATCAAGTCACTGCTGATC
AAAGTATCTGAATGAACTATGTNN
Run BLAST on NCBI

protein sequence of TCONS_00039639-protein

>TCONS_00039639-protein ID=TCONS_00039639-protein|Name=TCONS_00039639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
XIVHSDTLISSDLICLTETQLSPSSETNDIDESLQNFKIDYNNNSVNRFQ
NTACCANSSVEILECQKAAGYTQIMFKKETFSEQPITILLLYKPPNFSRN
TFLEELRTLLYDEVQIILGDFNIDALDAANEDLADVLSSYKLIVNEPTHL
AGGLLDHVYLKKSYLDKKEVQCFVKDIYFSDHDGVCFTLLNNS
Run BLAST on NCBI

transcript from alignment at sc0002154:3259..3882

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039639 ID=TCONS_00039639|Name=TCONS_00039639|organism=Clytia hemisphaerica|type=transcript|length=624bp|location=Sequence derived from alignment at sc0002154:3259..3882 (Clytia hemisphaerica)
NNACATAGTTCATTCAGATACTTTGATCAGCAGTGACTTGATATGCCTTA
CTGAAACTCAACTGTCACCTTCAAGTGAAACAAATGACATTGATGAAtcc
ttgcaaaatttcaaaattgattacAATAATAATTCAGTCAATAGATTTCA
AAACACTGCATGTTGTGCAAATTCTTCAGTAGAAATTTTAGAATGCCAAA
AAGCAGCTGGTTATACACAGATAATGTTTAAAAAAGAGACATTTAGTGAG
CAACCTATTACAATTCTACTCTTGTACAAGCCACCTAACTTTTCAAGAAA
TACTTTTCTTGAAGAACTGAGAACACTTTTATATGATGAAGTACAGATTA
TCCTTGGAGATTTCAATATTGATGCTTTGGATGCTGCAAATGAAGACCTT
GCTGATGTGCTCTCGTCATACAAACTGATAGTGAATGAACCTACTCATTT
GGCAGGTGGTCTTCTTGATCATGTGTATTTGAAAAAGAGttacttagata
aaaaagaagtacaatgctttgtaaaagatatatatttttcagacCATGAT
GGAGTTTGCTTCACTCTATTGAACAATTCCTAAATATTCAAACATGTATA
ACCATATAGCTTACTTAGCCTGCT

Coding sequence (CDS) from alignment at sc0002154:3259..3882

>TCONS_00039639 ID=TCONS_00039639|Name=TCONS_00039639|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0002154:3259..3882 (Clytia hemisphaerica)
NACATAGTTCATTCAGATACTTTGATCAGCAGTGACTTGATATGCCTTAC
TGAAACTCAACTGTCACCTTCAAGTGAAACAAATGACATTGATGAAtcct
tgcaaaatttcaaaattgattacAATAATAATTCAGTCAATAGATTTCAA
AACACTGCATGTTGTGCAAATTCTTCAGTAGAAATTTTAGAATGCCAAAA
AGCAGCTGGTTATACACAGATAATGTTTAAAAAAGAGACATTTAGTGAGC
AACCTATTACAATTCTACTCTTGTACAAGCCACCTAACTTTTCAAGAAAT
ACTTTTCTTGAAGAACTGAGAACACTTTTATATGATGAAGTACAGATTAT
CCTTGGAGATTTCAATATTGATGCTTTGGATGCTGCAAATGAAGACCTTG
CTGATGTGCTCTCGTCATACAAACTGATAGTGAATGAACCTACTCATTTG
GCAGGTGGTCTTCTTGATCATGTGTATTTGAAAAAGAGttacttagataa
aaaagaagtacaatgctttgtaaaagatatatatttttcagacCATGATG
GAGTTTGCTTCACTCTATTGAACAATTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023948XLOC_023948Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039639-proteinTCONS_00039639-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039639-exon-sc0002154-1491911889:3259..3882TCONS_00039639-exon-sc0002154-1491911889:3259..3882Clytia hemisphaericaexon
TCONS_00039639-exon-sc0002154-1510915933:3259..3882TCONS_00039639-exon-sc0002154-1510915933:3259..3882Clytia hemisphaericaexon
TCONS_00039639-exon-sc0002154-1575043694:3259..3882TCONS_00039639-exon-sc0002154-1575043694:3259..3882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002154supercontigsc0002154:3259..3882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71282	0.959041	1.79482	0.720878	0.574448	0	0.395469	0	0.914587	0.174295	0.759536	0.725675	0.499326	1.32843	0.945091	1.12319	0.832599	0.60164	1.53739	0.491254	1.60548	3.15323	1.07421	0.790421	0	0	3.33324	0.753814	0.41197	1.16384
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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