TCONS_00039632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039632
Unique NameTCONS_00039632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039632 ID=TCONS_00039632|Name=TCONS_00039632|organism=Clytia hemisphaerica|type=transcript|length=1322bp
GTGCAACATTCAAATACCACgaaaccaatttttttagaatagagTTTTCA
AATAGACGGAGgagagttctggtctgtaaagtatacaaacagagtaggta
gtaagtatcaagtagtaggtagtaagcgttttgtacttgccgatttaaaa
agttaaatatgTTATAAATGAATCAGGAACATTTATCTACTAACCTAATA
ATGTTGTATTTGTTGTAGACAGAGGagtggttgttgtagttgtgGTAGGC
GGAGGCGtggttgttgtggttgttgttgtagtaGGCGGAGTAGTGGTTGC
TGTAGTTGTGGTAGGCGGAGAGGTAATTGTTGTTGTTTTAGTAGGTGAAG
GAGTGGTTGTCGCAGTTGTGGTAGGCGGGGGCGTACTTGTTGTAGTAGTT
GTAGTAGGCGGAGGCGTTGTTGTTGTAGTTGCGGTAGGCGTAGGCGTGGT
TGTTGTAGTTAGAGTAGGCGGAGGGCCGGTGGCTGTAGTTGTTGTTGTAG
TAGGCGGGGAAGTGTTTGTTGTAGTTGTTGTAGGCTTAAGCGTTGTTTTT
GCAGCTGTTGTAGACAGTGGCGTGGTTGTCGTAGTTGTGGTAGGCGGAGG
CgtggttgttgttgtagtaAGCGGAGTGGTGGTTGCTGTAGTTGTGGTAG
GCGGAGACGTAATTGTTGTTGTTTTAGTAGGTGAAGGAGTGGTTGTTGTA
GTTTTGGTAGGCGGGGAAGTGTTTGTTGTAGTTGTTGTAGGCTTAAGCGT
TGTTTTTGCAGCTGTTGTAGACAGTGGCGTGGTTGTCGTAGTTGTGGTAG
GCGGAGGCgtggttgttgttgtagtaAGCGGAGTGGTGGTTGCTGTAGTT
GTGGTAGGCGGAGACGTAATTGTTGTTGTTTTAGTAGGTGAAGGAGTGGT
TGTTGTAGTTTTGGTAGGCGGGGGCTTGCTTGTTGTAGTAGTTGTAGTAG
GCGGAGGCGTTGTTGTTGTAGTTGCGGTAGGCGGAGGcgtggttgttgta
gttgtagtAGGCGGAGGGCCGGTTGCTGTAGTTGTTGTTGTAGTAGGCGG
GGAAGTGTTTGTTGTAGTTGTTGTAGGCTTAAGCGTTGTTTTTGCAGCTG
TTGTAGGCAGTGGCGTGGTTGTTGTACGCTGAAACTTGGTTGTTGTACTT
TTAGTAAGCCAGTTCCAGGTTGTTGTGGTTGTGGTAAGCTGTGGAGGTGT
AGTTGTGGTAGGTGGAAATGTGGTAGGTGGAAATGTTGCTgctgttattg
ttttttttgtactttgaagCTCTTGCATATCATTTCTTTCTTCTCCTATC
TGCAGCACAGCTCGTGTCTCAT
Run BLAST on NCBI

transcript from alignment at sc0002153:18885..20335-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039632 ID=TCONS_00039632|Name=TCONS_00039632|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at sc0002153:18885..20335- (Clytia hemisphaerica)
GTGCAACATTCAAATACCACGAAACCAATTTTTTTAGAATAGAGTTTTCA
AATAGACGGAGGAGAGTTCTGGTCTGTAAAGTATACAAACAGAGTAGGTA
GTAAGTATCAAGTAGTAGGTAGTAAGCGTTTTGTACTTGCCGATTTAAAA
AGTTAAATATGTTATAAATGAATCAGGAACATTTATCTACTAACCTAATA
ATGTTGTATTTGTTGTAGACAGAGGAGTGGTTGTTGTAGTTGTGGTAGGC
GGAGGCGTGGTTGTTGTGGTTGTTGTTGTAGTAGGCGGAGTAGTGGTTGC
TGTAGTTGTGGTAGGCGGAGAGGTAATTGTTGTTGTTTTAGTAGGTGAAG
GAGTGGTTGTCGCAGTTGTGGTAGGCGGGGGCGTACTTGTTGTAGTAGTT
GTAGTAGGCGGAGGCGTTGTTGTTGTAGTTGCGGTAGGCGTAGGCGTGGT
TGTTGTAGTTAGAGTAGGCGGAGGGCCGGTGGCTGTAGTTGTTGTTGTAG
TAGGCGGGGAAGTGTTTGTTGTAGTTGTTGTAGGCTTAAGCGTTGTTTTT
GCAGCTGTTGTAGACAGTGGCGTGGTTGTCGTAGTTGTGGTAGGCGGAGG
CGTGGTTGTTGTTGTAGTAAGCGGAGTGGTGGTTGCTGTAGTTGTGGTAG
GCGGAGACGTAATTGTTGTTGTTTTAGTAGGTGAAGGAGTGGTTGTTGTA
GTTTTGGTAGGCGGGGGCTTGCTTGTTGTAGTAGTTGTAGTAGGCGGAGG
CGTTGTTGTTGTAGTTGCGGTAGGCGGAGGCGTGGTTGTTGTAGTTAGAG
TAGGCGGAGGGCCGGTGGCTGTAGTTGTTGTTGTAGTAGGCGGGGAAGTG
TTTGTTGTAGTTGTTGTAGGCTTAAGCGTTGTTTTTGCAGCTGTTGTAGA
CAGTGGCGTGGTTGTCGTAGTTGTGGTAGGCGGAGGCGTGGTTGTTGTTG
TAGTAAGCGGAGTGGTGGTTGCTGTAGTTGTGGTAGGCGGAGACGTAATT
GTTGTTGTTTTAGTAGGTGAAGGAGTGGTTGTTGTAGTTTTGGTAGGCGG
GGGCTTGCTTGTTGTAGTAGTTGTAGTAGGCGGAGGCGTTGTTGTTGTAG
TTGCGGTAGGCGGAGGCGTGGTTGTTGTAGTTGTAGTAGGCGGAGGGCCG
GTTGCTGTAGTTGTTGTTGTAGTAGGCGGGGAAGTGTTTGTTGTAGTTGT
TGTAGGCTTAAGCGTTGTTTTTGCAGCTGTTGTAGGCAGTGGCGTGGTTG
TTGTACGCTGAAACTTGGTTGTTGTACTTTTAGTAAGCCAGTTCCAGGTT
GTTGTGGTTGTGGTAAGCTGTGGAGGTGTAGTTGTGGTAGGTGGAAATGT
GGTAGGTGGAAATGTTGCTGCTGTTATTGTTTTTTTTGTACTTTGAAGCT
CTTGCATATCATTTCTTTCTTCTCCTATCTGCAGCACAGCTCGTGTCTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023943XLOC_023943Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039632-exon-sc0002153-1575043694:19626..20335TCONS_00039632-exon-sc0002153-1575043694:19626..20335Clytia hemisphaericaexon
TCONS_00039632-exon-sc0002153-1575043694:18885..19496TCONS_00039632-exon-sc0002153-1575043694:18885..19496Clytia hemisphaericaexon
TCONS_00039632-exon-sc0002153-1510915933:19626..20335TCONS_00039632-exon-sc0002153-1510915933:19626..20335Clytia hemisphaericaexon
TCONS_00039632-exon-sc0002153-1510915933:18885..19496TCONS_00039632-exon-sc0002153-1510915933:18885..19496Clytia hemisphaericaexon
TCONS_00039632-exon-sc0002153-1491911889:19626..20335TCONS_00039632-exon-sc0002153-1491911889:19626..20335Clytia hemisphaericaexon
TCONS_00039632-exon-sc0002153-1491911889:18885..19496TCONS_00039632-exon-sc0002153-1491911889:18885..19496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002153supercontigsc0002153:18885..20335 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.194592	0.492761	0	0.417713	0.869572	0.517512	0.441082	0	0	0	0.014822	0.106083	0.295533	0	0	0.404769	0.110605	0.591942	0.224404	0	0.276336	0.423071	0.318129
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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