|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039627 ID=TCONS_00039627|Name=TCONS_00039627|organism=Clytia hemisphaerica|type=transcript|length=1794bp
GTAGCAAAATGGAAGATACACTCGCCACATGGTTTGTACAGCAAGGTCTA
CCAAGGATCAGAATACCATGGTTTGATGGCACTCCATCAAGCTACGTAGA
ATTCATAACCAGTTTTAGAGATCTTGTCCACAACCAAGGATATTTGGCCA
CGCTTCAGAAATGCATCTATCTACATCAAGCTGTACGAGGGGAAGTCAAG
AGGTCGATCCAAGGCTTCAGAAATGACCATGAAGGCTACGTCCTTGCACT
CAGAAGAATAAAGTACATGTTTGGTCAACGATCAAGAATTGCAGAGTCCG
TCATCACAAAGATTGTCGACTATAAATCAATTGGCAACAGAGATCAAACT
TCGCTCACCGAGTGATTGCTTGGTGACGCTACGAAAACTAAACTATGTTT
CCGACCTATACAGCACAGACATACTCCGACAAGCCCGCACCAAACTTCCG
CAGTACCTGCTACATAAATGGGCTGATTATTGTCTTACCCTGAGAAGATC
CTGTGAACCAAATCTCACCCACTTGGAAGCCTGGCTTCAAGAAAGGATTC
TTGCATCCAAAGACTCTTATCTACCAAGAAAGAATGACGATAGAAAAGAT
CACAGGGACCATAAAGATCAAAGAGATTCAAGAAATGGACAAGGACAAGG
GAAGCAAAATCAATCACATGACAATGGCCATTGATCAAATTGGTCCGGCA
AAATTGGAGATGGAAAACCAACAGGACAACaaggaacaaaaacaaaattc
aacgACAACAAGTCAAGCAACAAATGCTACTTATGCAAGGATGAGCATCA
AATTCACAAATGTCCAAAATACGTATCACTGGATCAACCAGAACGCTTTG
AAATGGCAAAGAAGTTGAATCTTTGCTACAACTGCTTGAAGAAGGATCAC
TTTACTTCAAAATGCAAATCAAAGAACAATTGTTTTAACGCTGGTTGCGA
TGAACGTCATCATACCACGCTGCATGAATACTTCACTGAACATGTAAAAG
AATCGTTCTCAGGAAACACTCAAGTTGTTGAACCATCTGGTACAGTGTAT
CTATCTGTCGTTCCAGTAAAGCTTCAAGGACTGGATTCTTCATCTATCAC
TACCTACGCACTTTTGGACAGTCAAAGCACTTTGGTCAGAGATGACGTTG
CcaagaaactcaaactgaagaAAAAGGACAAGAAGATTACCAtaacaaca
atcaatgacattGGAACAAAAACTAAAGTCAAAGAAACGTCAATACGTGT
CGAAAACAGAGACGATGGAATTGGTGTCAACATCGACCACTGCTATATTG
TGCCAAAATCAAGCTTTCACATGCCAAAGCAGCAATATCCTTTAACaatg
atgaaaaagatgaaGGAGGAGAAAGGCATAAAACTACACAACGCTCTTTA
TGAAGAAATTGGAATTCTCATAGGAGCAAACGTTCCATCCGTCCACATAC
CCTTGGAAGTCAAGGAAGGAGAAAATTCCGAACCACTTGCTATCAAGACA
ATCTTTGGATGGACCCTCTTCGGTGCCAGTGTACAACCAGAGACGGTATC
AATGAACAGAATTGTTATCAAACCAGAAGCTGATCTCCATCACTGTGTAC
AAAGAATATGGGATCAAGACTTTATTACAAACCCATCAGACCGTGACGAA
GCCCTATCCATAGAGGATAAACAGTGTCACGAAAAGCTTGAATCGGAAAC
TGTTCTCGCTGATGGAAAGTATCAAGTACCAATGCTTTGGAAGAAAGATG
TAACACTTCCAAACAACCGTACTGTGGCCGAGAAAAGATTCCAC Run BLAST on NCBI protein sequence of TCONS_00039627-protein >TCONS_00039627-protein ID=TCONS_00039627-protein|Name=TCONS_00039627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MAKKLNLCYNCLKKDHFTSKCKSKNNCFNAGCDERHHTTLHEYFTEHVKE
SFSGNTQVVEPSGTVYLSVVPVKLQGLDSSSITTYALLDSQSTLVRDDVA
KKLKLKKKDKKITITTINDIGTKTKVKETSIRVENRDDGIGVNIDHCYIV
PKSSFHMPKQQYPLTMMKKMKEEKGIKLHNALYEEIGILIGANVPSVHIP
LEVKEGENSEPLAIKTIFGWTLFGASVQPETVSMNRIVIKPEADLHHCVQ
RIWDQDFITNPSDRDEALSIEDKQCHEKLESETVLADGKYQVPMLWKKDV
TLPNNRTVAEKRFH Run BLAST on NCBI transcript from alignment at sc0002152:16542..18335 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039627 ID=TCONS_00039627|Name=TCONS_00039627|organism=Clytia hemisphaerica|type=transcript|length=1794bp|location=Sequence derived from alignment at sc0002152:16542..18335 (Clytia hemisphaerica)
GTGGAATCTTTTCTCGGCCACAGTACGGTTGTTTGGAAGTGTTACATCTT
TCTTCCAAAGCATTGGTACTTGATACTTTCCATCAGCGAGAACAGTTTCC
GATTCAAGCTTTTCGTGACACTGTTTATCCTCTATGGATAGGGCTTCGTC
ACGGTCTGATGGGTTTGTAATAAAGTCTTGATCCCATATTCTTTGTACAC
AGTGATGGAGATCAGCTTCTGGTTTGATAACAATTCTGTTCATTGATACC
GTCTCTGGTTGTACACTGGCACCGAAGAGGGTCCATCCAAAGATTGTCTT
GATAGCAAGTGGTTCGGAATTTTCTCCTTCCTTGACTTCCAAGGGTATGT
GGACGGATGGAACGTTTGCTCCTATGAGAATTCCAATTTCTTCATAAAGA
GCGTTGTGTAGTTTTATGCCTTTCTCCTCCttcatctttttcatcattGT
TAAAGGATATTGCTGCTTTGGCATGTGAAAGCTTGATTTTGGCACAATAT
AGCAGTGGTCGATGTTGACACCAATTCCATCGTCTCTGTTTTCGACACGT
ATTGACGTTTCTTTGACTTTAGTTTTTGTTCCaatgtcattgattgttgt
taTGGTAATCTTCTTGTCCTTTTtcttcagtttgagtttcttgGCAACGT
CATCTCTGACCAAAGTGCTTTGACTGTCCAAAAGTGCGTAGGTAGTGATA
GATGAAGAATCCAGTCCTTGAAGCTTTACTGGAACGACAGATAGATACAC
TGTACCAGATGGTTCAACAACTTGAGTGTTTCCTGAGAACGATTCTTTTA
CATGTTCAGTGAAGTATTCATGCAGCGTGGTATGATGACGTTCATCGCAA
CCAGCGTTAAAACAATTGTTCTTTGATTTGCATTTTGAAGTAAAGTGATC
CTTCTTCAAGCAGTTGTAGCAAAGATTCAACTTCTTTGCCATTTCAAAGC
GTTCTGGTTGATCCAGTGATACGTATTTTGGACATTTGTGAATTTGATGC
TCATCCTTGCATAAGTAGCATTTGTTGCTTGACTTGTTGTcgttgaattt
tgtttttgttccttGTTGTCCTGTTGGTTTTCCATCTCCAATTTTGCCGG
ACCAATTTGATCAATGGCCATTGTCATGTGATTGATTTTGCTTCCCTTGT
CCTTGTCCATTTCTTGAATCTCTTTGATCTTTATGGTCCCTGTGATCTTT
TCTATCGTCATTCTTTCTTGGTAGATAAGAGTCTTTGGATGCAAGAATCC
TTTCTTGAAGCCAGGCTTCCAAGTGGGTGAGATTTGGTTCACAGGATCTT
CTCAGGGTAAGACAATAATCAGCCCATTTATGTAGCAGGTACTGCGGAAG
TTTGGTGCGGGCTTGTCGGAGTATGTCTGTGCTGTATAGGTCGGAAACAT
AGTTTAGTTTTCGTAGCGTCACCAAGCAATCACTCGGTGAGCGAAGTTTG
ATCTCTGTTGCCAATTGATTTATAGTCGACAATCTTTGTGATGACGGACT
CTGCAATTCTTGATCGTTGACCAAACATGTACTTTATTCTTCTGAGTGCA
AGGACGTAGCCTTCATGGTCATTTCTGAAGCCTTGGATCGACCTCTTGAC
TTCCCCTCGTACAGCTTGATGTAGATAGATGCATTTCTGAAGCGTGGCCA
AATATCCTTGGTTGTGGACAAGATCTCTAAAACTGGTTATGAATTCTACG
TAGCTTGATGGAGTGCCATCAAACCATGGTATTCTGATCCTTGGTAGACC
TTGCTGTACAAACCATGTGGCGAGTGTATCTTCCATTTTGCTAC Coding sequence (CDS) from alignment at sc0002152:16542..18335 >TCONS_00039627 ID=TCONS_00039627|Name=TCONS_00039627|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0002152:16542..18335 (Clytia hemisphaerica)
GTGGAATCTTTTCTCGGCCACAGTACGGTTGTTTGGAAGTGTTACATCTT
TCTTCCAAAGCATTGGTACTTGATACTTTCCATCAGCGAGAACAGTTTCC
GATTCAAGCTTTTCGTGACACTGTTTATCCTCTATGGATAGGGCTTCGTC
ACGGTCTGATGGGTTTGTAATAAAGTCTTGATCCCATATTCTTTGTACAC
AGTGATGGAGATCAGCTTCTGGTTTGATAACAATTCTGTTCATTGATACC
GTCTCTGGTTGTACACTGGCACCGAAGAGGGTCCATCCAAAGATTGTCTT
GATAGCAAGTGGTTCGGAATTTTCTCCTTCCTTGACTTCCAAGGGTATGT
GGACGGATGGAACGTTTGCTCCTATGAGAATTCCAATTTCTTCATAAAGA
GCGTTGTGTAGTTTTATGCCTTTCTCCTCCttcatctttttcatcattGT
TAAAGGATATTGCTGCTTTGGCATGTGAAAGCTTGATTTTGGCACAATAT
AGCAGTGGTCGATGTTGACACCAATTCCATCGTCTCTGTTTTCGACACGT
ATTGACGTTTCTTTGACTTTAGTTTTTGTTCCaatgtcattgattgttgt
taTGGTAATCTTCTTGTCCTTTTtcttcagtttgagtttcttgGCAACGT
CATCTCTGACCAAAGTGCTTTGACTGTCCAAAAGTGCGTAGGTAGTGATA
GATGAAGAATCCAGTCCTTGAAGCTTTACTGGAACGACAGATAGATACAC
TGTACCAGATGGTTCAACAACTTGAGTGTTTCCTGAGAACGATTCTTTTA
CATGTTCAGTGAAGTATTCATGCAGCGTGGTATGATGACGTTCATCGCAA
CCAGCGTTAAAACAATTGTTCTTTGATTTGCATTTTGAAGTAAAGTGATC
CTTCTTCAAGCAGTTGTAGCAAAGATTCAACTTCTTTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039627-exon-sc0002152-1491911889:16542..18335 | TCONS_00039627-exon-sc0002152-1491911889:16542..18335 | Clytia hemisphaerica | exon |
| TCONS_00039627-exon-sc0002152-1510915933:16542..18335 | TCONS_00039627-exon-sc0002152-1510915933:16542..18335 | Clytia hemisphaerica | exon |
| TCONS_00039627-exon-sc0002152-1575043694:16542..18335 | TCONS_00039627-exon-sc0002152-1575043694:16542..18335 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002152 | supercontig | sc0002152:16542..18335 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
|
