TCONS_00039626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039626
Unique NameTCONS_00039626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039626 ID=TCONS_00039626|Name=TCONS_00039626|organism=Clytia hemisphaerica|type=transcript|length=743bp
CCAACACATAACAAATGAAAGGAATCGTTTCAAGACCTTCGTAGCAAACA
GAGTCTCAGAAATTCGAGAAGTGACACAACCTACACAATGGCATCACGTT
AATGGTGAAGAAAATCCTGGTGACATTACCACAAGAGGAGTCTTCAGCGT
AAAAGAACTACTTCAGGGAAACAAAAATCGAAGTTGGCTCAAAGGACCAT
AATTCTTAATGGCAGACGAATCAACTTGGAAGGACAAGAAGATTGAAGAA
ATCGACCCTGATGATACCGAAATCAGAAAAACCTTCATTTCAATGATTAG
ACAGGACAATTTAACCTGGTTNTACCGAAATCAGAAAAACCTTCATTTCA
ATGATTAGACAGGACAATTCAACCTGGTTACCTTACACAGATTACTCAAA
CTTTAACAAGATTCTACGTTACATGGCTTGGGTTCTTCGTTATACCCGTA
ACCTTCGAGCAGAAGCTAAAAGGAAACGTGATAATTCTNATATTATGTGG
AAGGCAAGTAATCAAAACAGTCATCAAAGCATGCGTGGAATgtcaaagat
ttaaaaacaaacctGAGATTCCAATGATGGCCGACTTACCTGACATCAGA
ATGCAACTCAACCAACCACCATTCACCAACACTGGTGTGGATTTCTTTGG
ACCAATCCTCGTTAAACAAGGTCGCAAACGTCTGAAGCGCTGGGTTTCAC
TATTTACATGCATGACGGTCCGATGCGTCCATCTTGAAGTTGT
Run BLAST on NCBI

transcript from alignment at sc0002152:14546..15288

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039626 ID=TCONS_00039626|Name=TCONS_00039626|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0002152:14546..15288 (Clytia hemisphaerica)
ACAACTTCAAGATGGACGCATCGGACCGTCATGCATGTAAATAGTGAAAC
CCAGCGCTTCAGACGTTTGCGACCTTGTTTAACGAGGATTGGTCCAAAGA
AATCCACACCAGTGTTGGTGAATGGTGGTTGGTTGAGTTGCATTCTGATG
TCAGGTAAGTCGGCCATCATTGGAATCTCaggtttgtttttaaatctttg
acATTCCACGCATGCTTTGATGACTGTTTTGATTACTTGCCTTCCACATA
ATATNAGAATTATCACGTTTCCTTTTAGCTTCTGCTCGAAGGTTACGGGT
ATAACGAAGAACCCAAGCCATGTAACGTAGAATCTTGTTAAAGTTTGAGT
AATCTGTGTAAGGTAACCAGGTTGAATTGTCCTGTCTAATCATTGAAATG
AAGGTTTTTCTGATTTCGGTANAACCAGGTTAAATTGTCCTGTCTAATCA
TTGAAATGAAGGTTTTTCTGATTTCGGTATCATCAGGGTCGATTTCTTCA
ATCTTCTTGTCCTTCCAAGTTGATTCGTCTGCCATTAAGAATTATGGTCC
TTTGAGCCAACTTCGATTTTTGTTTCCCTGAAGTAGTTCTTTTACGCTGA
AGACTCCTCTTGTGGTAATGTCACCAGGATTTTCTTCACCATTAACGTGA
TGCCATTGTGTAGGTTGTGTCACTTCTCGAATTTCTGAGACTCTGTTTGC
TACGAAGGTCTTGAAACGATTCCTTTCATTTGTTATGTGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023939XLOC_023939Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039626-exon-sc0002152-1491911889:14546..15288TCONS_00039626-exon-sc0002152-1491911889:14546..15288Clytia hemisphaericaexon
TCONS_00039626-exon-sc0002152-1510915933:14546..15288TCONS_00039626-exon-sc0002152-1510915933:14546..15288Clytia hemisphaericaexon
TCONS_00039626-exon-sc0002152-1575043694:14546..15288TCONS_00039626-exon-sc0002152-1575043694:14546..15288Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002152supercontigsc0002152:14546..15288 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.314097	0.568108	0.150448	0.220785	0.323584	0	0.170832	0.42341	0.13213	0.779022	0.673103	0.292335	0.220928	0.334094	0.0892359	0.161941	0	0.255599	0.282499	0.393192	0.221997	0.20252	1.09408	0.882488	0.713312	0.716341	0.417615	1.0101	1.49374	0.723239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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