TCONS_00039623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039623
Unique NameTCONS_00039623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039623 ID=TCONS_00039623|Name=TCONS_00039623|organism=Clytia hemisphaerica|type=transcript|length=1513bp
ATAGTGTGTTGGCTCTTGTATGTAATCGTTATATAGtcagaaatatttaa
aaaagaacattttggaagaaattcttcattttgaaaattcttagagggtg
acaattttgaaaatactaATAAGCTGTAAATAATATATCTAATTCAGTTG
CAATTACGTTCCATAGTtctaaaaaggttttttttccttcataAAACCTC
AATATCTCCATTCTTTATTTGAATCAGCATAATTTAACGGTGAAGGTTTT
TGCTCATCTTTAACTTTAATCCATAGAAGCATCATGAAAATGAGCGTCGT
GTAAAgattgtctttttcttttgtttcaaagtgAAGTGTCATTGTCAATC
AAAATTGTGGTGTAATTTCGATTAAAGTTCGCATCATTATTCTTGAAACC
TTTTTTGGTCCTTCTTTTAAGTATTTCAAGAGTTCGGGGAAATTCAACGT
ACAAGTAATTGTTTGCGTTGACGTTGTTTTGATATTGGAACTCATAATAA
CGGTATTCCAAAGTACTACTGATCTGCCTTCCCCTTCTTTTTAGCATTTA
TTAAATTCCTACCAAAAGCAAAGTGATTCAACTCACTATCTCGATATTTT
GAAGAGCCATTCTGGAACCTCTTACTTTGATCACCACTTGACACAAACCA
TTCTGTAAATAACAAACATTCAAGAGTTGTTTGTACATCTCACCCCGCGT
AAAGATGATCGATTCAACCCGCAATGTTTCTCTTGCCGACAGATAAAGCA
GTGGGGGTCAGGAACTGTGTGATTTCGATTCAATCCGAGTTCAGATATCA
ACCGATTGAGTACGCGTTCATCAACACGGTCAATTCCTCTCTGTGGTTGA
GGTCTGTTTGTTGATGATATCGTGGAAGAGGATGACAAAACACTGCTTTT
ACCACCTCGTTTAGAGCTCAGTGATTGCAAAGACATCTTGATAGATTCTG
TTAGTAAGCTCCTCTCGATAGATATATAACTTTGTATGTGATAAAAATGA
AGTAGTTTCCGAAAACAAGAAGCCTGATTACCGGTCCTGAATAAAGTTCT
TTGTCCTCTTGACTCAAAAAGTAACAACAAGTCTATAGTAGCACACTGCT
GGTACGAGTTCACGATAAAACTAATTAGATATATCCAATACCAAGCAAAG
TAGAATTGAACTTTCGAAAGTACAGTTAGTTTCCTTCCAAAATCACTCAC
GAATTCTTTCCTCTGTGAGTTAATATCTGGTCAAAAACCCTTCCTTGATA
GATGAAGTCTTCTTCCTTTGAAGGCTAATTCCAATCTGGAGCTGTTATCT
AAATCACAACTGCTTATAAAGCCAATCCAACCCACCATTTAGTGAAAAAT
AACAGATCAGCTATAAACAAGTGAGCGTACTTACTTacgaagaaagaaag
aaaaaaagttgtgTGTGTGTCAGACTCTCGTGAATTAAGCTTACTAAAAT
GATAATAATCCAAACAACAGAATTATGTCATCAACATTCAAAATGTCATC
AATCTATTACGAG
Run BLAST on NCBI

transcript from alignment at sc0002150:16434..17946-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039623 ID=TCONS_00039623|Name=TCONS_00039623|organism=Clytia hemisphaerica|type=transcript|length=1513bp|location=Sequence derived from alignment at sc0002150:16434..17946- (Clytia hemisphaerica)
ATAGTGTGTTGGCTCTTGTATGTAATCGTTATATAGTCAGAAATATTTAA
AAAAGAACATTTTGGAAGAAATTCTTCATTTTGAAAATTCTTAGAGGGTG
ACAATTTTGAAAATACTAATAAGCTGTAAATAATATATCTAATTCAGTTG
CAATTACGTTCCATAGTTCTAAAAAGGTTTTTTTTCCTTCATAAAACCTC
AATATCTCCATTCTTTATTTGAATCAGCATAATTTAACGGTGAAGGTTTT
TGCTCATCTTTAACTTTAATCCATAGAAGCATCATGAAAATGAGCGTCGT
GTAAAGATTGTCTTTTTCTTTTGTTTCAAAGTGAAGTGTCATTGTCAATC
AAAATTGTGGTGTAATTTCGATTAAAGTTCGCATCATTATTCTTGAAACC
TTTTTTGGTCCTTCTTTTAAGTATTTCAAGAGTTCGGGGAAATTCAACGT
ACAAGTAATTGTTTGCGTTGACGTTGTTTTGATATTGGAACTCATAATAA
CGGTATTCCAAAGTACTACTGATCTGCCTTCCCCTTCTTTTTAGCATTTA
TTAAATTCCTACCAAAAGCAAAGTGATTCAACTCACTATCTCGATATTTT
GAAGAGCCATTCTGGAACCTCTTACTTTGATCACCACTTGACACAAACCA
TTCTGTAAATAACAAACATTCAAGAGTTGTTTGTACATCTCACCCCGCGT
AAAGATGATCGATTCAACCCGCAATGTTTCTCTTGCCGACAGATAAAGCA
GTGGGGGTCAGGAACTGTGTGATTTCGATTCAATCCGAGTTCAGATATCA
ACCGATTGAGTACGCGTTCATCAACACGGTCAATTCCTCTCTGTGGTTGA
GGTCTGTTTGTTGATGATATCGTGGAAGAGGATGACAAAACACTGCTTTT
ACCACCTCGTTTAGAGCTCAGTGATTGCAAAGACATCTTGATAGATTCTG
TTAGTAAGCTCCTCTCGATAGATATATAACTTTGTATGTGATAAAAATGA
AGTAGTTTCCGAAAACAAGAAGCCTGATTACCGGTCCTGAATAAAGTTCT
TTGTCCTCTTGACTCAAAAAGTAACAACAAGTCTATAGTAGCACACTGCT
GGTACGAGTTCACGATAAAACTAATTAGATATATCCAATACCAAGCAAAG
TAGAATTGAACTTTCGAAAGTACAGTTAGTTTCCTTCCAAAATCACTCAC
GAATTCTTTCCTCTGTGAGTTAATATCTGGTCAAAAACCCTTCCTTGATA
GATGAAGTCTTCTTCCTTTGAAGGCTAATTCCAATCTGGAGCTGTTATCT
AAATCACAACTGCTTATAAAGCCAATCCAACCCACCATTTAGTGAAAAAT
AACAGATCAGCTATAAACAAGTGAGCGTACTTACTTACGAAGAAAGAAAG
AAAAAAAGTTGTGTGTGTGTCAGACTCTCGTGAATTAAGCTTACTAAAAT
GATAATAATCCAAACAACAGAATTATGTCATCAACATTCAAAATGTCATC
AATCTATTACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023936XLOC_023936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039623-exon-sc0002150-1575043694:16434..17946TCONS_00039623-exon-sc0002150-1575043694:16434..17946Clytia hemisphaericaexon
TCONS_00039623-exon-sc0002150-1510915933:16434..17946TCONS_00039623-exon-sc0002150-1510915933:16434..17946Clytia hemisphaericaexon
TCONS_00039623-exon-sc0002150-1491911889:16434..17946TCONS_00039623-exon-sc0002150-1491911889:16434..17946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002150supercontigsc0002150:16434..17946 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.258096	0.251686	0	0	0	0	0.565584	0	0.841434	0.232659	0.187186	0.891148	2.37662	0.623963	0.51436	0.168608	0.377369	0	0.844969	0	0.576236	0	0.573611	0.504515	1.3508	6.56023	7.90162	7.53746	8.04637
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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