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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039622 ID=TCONS_00039622|Name=TCONS_00039622|organism=Clytia hemisphaerica|type=transcript|length=1362bp
ATAGTGTGTTGGCTCTTGTATGTAATCGTTATATAGtcagaaatatttaa
aaaagaacattttggaagaaattcttcattttgaaaattcttagagggtg
acaattttgaaaatactaATAAGCTGTAAATAATATATCTAATTCAGTTG
CAATTACGTTCCATAGTtctaaaaaggttttttttccttcataAAACCTC
AATATCTCCATTCTTTATTTGAATCAGCATAATTTAACGGTGAAGGTTTT
TGCTCATCTTTAACTTTAATCCATAGAAGCATCATGAAAATGAGCGTCGT
GTAAAgattgtctttttcttttgtttcaaagtgAAGTGTCATTGTCAATC
AAAATTGTGGTGTAATTTCGATTAAAGTTCGCATCATTATTCTTGAAACC
TTTTTTGGTCCTTCTTTTAAGTATTTCAAGAGTTCGGGGAAATTCAACGT
ACAAGTAATTGTTTGCGTTGACGTTGTTTTGATATTGGAACTCATAATAA
CGGTATTCCAAAGTACTACTGATCTGCCTTCCCCTTCTTTTTAGCATTTA
TTAAATTCCTACCAAAAGCAAAGTGATTCAACTCACTATCTCGATATTTT
GAAGAGCCATTCTGGAACCTCTTACTTTGATCACCACTTGACACAAACCA
TTCTGTAAATAACAAACATTCAAGAGTTGTTTGTACATCTCACCCCGCGT
AAAGATGATCGATTCAACCCGCAATGTTTCTCTTGCCGACAGATAAAGCA
GTGGGGGTCAGGAACTGTGTGATTTCGATTCAATCCGAGTTCAGATATCA
ACCGATTGAGTACGCGTTCATCAACACGGTCAATTCCTCTCTGTGGTTGA
GGTCTGTTTGTTGATGATATCGTGGAAGAGGATGACAAAACACTGCTTTT
ACCACCTCGTTTAGAGCTCAGTGATTGCAAAGACATCTTGATAGATTCTG
TTAGTAAGCTCCTCTCGATAGATATATAACTTTGTATGTGATAAAAATGA
AGTAGTTTCCGAAAACAAGAAGCCTGATTACCGGTCCTGAATAAAGTTCT
TTGTCCTCTTGACTCAAAAAGTAACAACAAGTCTATAGTAGCACACTGCT
GGTACGAGTTCACGATAAAACTAATTAGATATATCCAATACCAAGCAAAG
TAGAATTGAACTTTCGAAAGTACAGTTAGTTTCCTTCCAAAATCACTCAC
GAATTCTTTCCTCTGTGAGTTAATATCTGGTCAAAAACCCTTCCTTGATA
GATGAAGTCTTCTTCCTTTGAAGGCTAATTCCAATCTGGAGCTTTTATCT
AAATCACAACTGCTTATAAAGCCAATCCAACCCACCATTTAGTGAAAAAT
AACAGATCAGCT Run BLAST on NCBI transcript from alignment at sc0002150:15192..17946- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039622 ID=TCONS_00039622|Name=TCONS_00039622|organism=Clytia hemisphaerica|type=transcript|length=2755bp|location=Sequence derived from alignment at sc0002150:15192..17946- (Clytia hemisphaerica)
ATAGTGTGTTGGCTCTTGTATGTAATCGTTATATAGTCAGAAATATTTAA
AAAAGAACATTTTGGAAGAAATTCTTCATTTTGAAAATTCTTAGAGGGTG
ACAATTTTGAAAATACTAATAAGCTGTAAATAATATATCTAATTCAGTTG
CAATTACGTTCCATAGTTCTAAAAAGGTTTTTTTTCCTTCATAAAACCTC
AATATCTCCATTCTTTATTTGAATCAGCATAATTTAACGGTGAAGGTTTT
TGCTCATCTTTAACTTTAATCCATAGAAGCATCATGAAAATGAGCGTCGT
GTAAAGATTGTCTTTTTCTTTTGTTTCAAAGTGAAGTGTCATTGTCAATC
AAAATTGTGGTGTAATTTCGATTAAAGTTCGCATCATTATTCTTGAAACC
TTTTTTGGTCCTTCTTTTAAGTATTTCAAGAGTTCGGGGAAATTCAACGT
ACAAGTAATTGTTTGCGTTGACGTTGTTTTGATATTGGAACTCATAATAA
CGGTATTCCAAAGTACTACTGATCTGCCTTCCCCTTCTTTTTAGCATTTA
TTAAATTCCTACCAAAAGCAAAGTGATTCAACTCACTATCTCGATATTTT
GAAGAGCCATTCTGGAACCTCTTACTTTGATCACCACTTGACACAAACCA
TTCTGTAAATAACAAACATTCAAGAGTTGTTTGTACATCTCACCCCGCGT
AAAGATGATCGATTCAACCCGCAATGTTTCTCTTGCCGACAGATAAAGCA
GTGGGGGTCAGGAACTGTGTGATTTCGATTCAATCCGAGTTCAGATATCA
ACCGATTGAGTACGCGTTCATCAACACGGTCAATTCCTCTCTGTGGTTGA
GGTCTGTTTGTTGATGATATCGTGGAAGAGGATGACAAAACACTGCTTTT
ACCACCTCGTTTAGAGCTCAGTGATTGCAAAGACATCTTGATAGATTCTG
TTAGTAAGCTCCTCTCGATAGATATATAACTTTGTATGTGATAAAAATGA
AGTAGTTTCCGAAAACAAGAAGCCTGATTACCGGTCCTGAATAAAGTTCT
TTGTCCTCTTGACTCAAAAAGTAACAACAAGTCTATAGTAGCACACTGCT
GGTACGAGTTCACGATAAAACTAATTAGATATATCCAATACCAAGCAAAG
TAGAATTGAACTTTCGAAAGTACAGTTAGTTTCCTTCCAAAATCACTCAC
GAATTCTTTCCTCTGTGAGTTAATATCTGGTCAAAAACCCTTCCTTGATA
GATGAAGTCTTCTTCCTTTGAAGGCTAATTCCAATCTGGAGCTGTTATCT
AAATCACAACTGCTTATAAAGCCAATCCAACCCACCATTTAGTGAAAAAT
AACAGATCAGCTATAAACAAGTGAGCGTACTTACTTACGAAGAAAGAAAG
AAAAAAAGTTGTGTGTGTGTCAGACTCTCGTGAATTAAGCTTACTAAAAT
GATAATAATCCAAACAACAGAATTATGTCATCAACATTCAAAATGTCATC
AATCTATTACGAGATATGTCAAAAATTTTTCAATCATCATTAATTCTGAA
CAGGCTGCATCTTGTACTATGAGGGTACAGTATGTGGCCCCCAAAACGGT
GATCAAATTTGAAATTTCTCTCAAATCTAGAGGAAAAGAGATTTTACAAA
AATTTTTGCTGCATGAAAACCTTTAACATCTCTACTTTATTTCCTGGAAG
TTCTTTTTCAAAATTTCCAATTTCAACAATATTTTTCAATCGCTTAAAGA
TAGGTAGCTTTTTTCTAATGGCCCCCAAAACGGAGGTTTGAGATTATAGC
GATTTCTCGAGATATCTTTAATATATGGATACAAAATTTTGACCATAGTC
TTGAAATATGATTTAGAGGGTTTTGGGCATAAATTTATTTGATAAATTTT
TTACAGTATACCCCTGGTTGTCAAAATGCAGGTTTTGGGCCCCCAAAACG
TAGGTGTAGTTAAAATCAAATTATCAAGCCCAGTGGTAATAGGGGGAAAA
ACTATGAACATATTTGTGTTTTCCCTTAAATTTACGACCTGATAGATGTG
AAATTTATGATTTTTATGAAATATTTCAAGATTTTCGATATTGCAAAGTC
CAAACTGAAAATTTAGAAACTTTCAAAATGACAATTTTGATTTAACAACG
TCTTAATCAAGTTTTTGAAAACAAATCTCTTTTGAAAATAGTTCCATTCA
TGTATGGAATAAGCTGTGAAAATTTTAGAAAAAAAGCTTAACTGAAACTG
AAAATATTAAGCTTTAAAGATATTTTTCTACTATATTTTGTAAAAAAATG
ACAGAATTTGCCGTTTTTGCTGATTCAGCGAAAAATTTTATAAATAATGT
AAATTTTTTGTTATAAAATATTAACTCAAGGTGATAGGAATATAATTCCA
AGATTTTTTGCTTTTTCTCATATTTAGAATTTTCGGTTTTGTCAATGCTG
ATTCTAGGGNAAGTAACAACAAGTCTATAGTTGCACACTGCTGGTACGAG
TTTACGATAAAACTAATTAGATATATCCAATACCAAGCAAAGTGGAATTG
AACTTTCGAAAGTACAGTTAGTTTCCTTCCAAAATCACTCACGAATTCTT
TCCTCTGTAAGTTAATATCCGATCAAAAAATCCTTCCTTGATAGATGAAG
TCTTCTTCCTTTGAAGGCTAATTCCAATCTGGAGCTTTTATCTAAATCAC
AACTGCTTATAAAGCCAATCCAACCCACCATTTAGTGAAAAATAACAGAT
CAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039622-exon-sc0002150-1575043694:16674..17946 | TCONS_00039622-exon-sc0002150-1575043694:16674..17946 | Clytia hemisphaerica | exon |
| TCONS_00039622-exon-sc0002150-1575043694:15192..15280 | TCONS_00039622-exon-sc0002150-1575043694:15192..15280 | Clytia hemisphaerica | exon |
| TCONS_00039622-exon-sc0002150-1510915933:16674..17946 | TCONS_00039622-exon-sc0002150-1510915933:16674..17946 | Clytia hemisphaerica | exon |
| TCONS_00039622-exon-sc0002150-1510915933:15192..15280 | TCONS_00039622-exon-sc0002150-1510915933:15192..15280 | Clytia hemisphaerica | exon |
| TCONS_00039622-exon-sc0002150-1491911889:16674..17946 | TCONS_00039622-exon-sc0002150-1491911889:16674..17946 | Clytia hemisphaerica | exon |
| TCONS_00039622-exon-sc0002150-1491911889:15192..15280 | TCONS_00039622-exon-sc0002150-1491911889:15192..15280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002150 | supercontig | sc0002150:15192..17946 - |
Blast
The following BLAST results are available for this feature:
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