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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039618 ID=TCONS_00039618|Name=TCONS_00039618|organism=Clytia hemisphaerica|type=transcript|length=1387bp
NCAACTAACGACATGTCAGAAGAAGACAGCAACGAAATCCACAGTCTTAT
CGACGAAGCAAACGATCATATCGATGAATTCATAGTCGAAGACTGCCCTC
TTTCCGAGATCTCGAGATCCATCGACTTCCTTGAAAATCTTCGCAAGGTT
CTTCGAGACAAAGCACGTGCTGCCAAGATCGATCTTGTGGCCAACACTCA
TCCACTAGCTGTTTTGACCAATACAGGCTTGTTCAATATCAGGACATGTC
TTACCAAAGCAAAAGCCCAGAAGAATACACTCATCGCAGCTGACACCAAA
CCAATCATCTTACCGTCTACAAACGACGATCTTCCTGCTGCATTCATCAT
CAAAGACATCAACCAAAACCTGAAAGAAGTCAAAACCTTCATTACTCAAG
ATGTCACTGATATCGCCAAGGTTACTGATAAACAACTGATTCAAATCAAG
AAAGACATTCCCAGTGTTTTCGACAAGTTAGACAAGATCGCCTTGAAGTA
TGAGAAACTTTTACAACTGATAATTGTTGATGAGACCATTCTGGCAGAAG
TCCCAAAGATTGATAAACTTTATGAGACTTTAAATTCCTTCAAATCTGAC
TTTGCATCCAAAGTGAGCACAGAGTACAACAAGAGAGAGCTCGACAAGAA
CTATGACACAAAGCTTTTGCATATCAAGCTTGATAAATTCAGTGGTTATG
ATTCAGCCACTGACTTCTACACATTTCGCAACAACTTCGAGAAGCTCCAT
CTCATCAACACACCAACTCGACTGCTTCCTGACCTGCTCAAGAACAATTA
TCTATCCGAGCCAGCTCTCAGCCTTGTCAAATCATTTGATACCATTGACG
AAATATGGACCAAACTGGAGAATGCTTATGGCAATACCAAAACAATGCTT
CACAAGAAACTCCAGACTCTGTCCCTATCCGAACTCAAGTCGTCACGTGA
TCCTGAAAAACTTGTTCATTCGTTAAGCAAGTTTAAGAACATCATTCGTG
AAGCCATGTCACTTGCCAAGAAGCTACTTGCCAATCTCTACTTCAGCAAT
GCCCTATCGGACATCTATCAACAACTTGGTGATGGACGATTCACAAGATT
CCTTGCAACAATCGACGACAAGNAGCAGCTTGTCATGGCAGTAAGgttat
tggtagaaagataAGATCGAAAACGCTTACCCGATTCGTTGATGTGAGAA
ATACCAAAATTACCAATAGGATCCTCTGTTTCGGACGAGGTACCCATACT
CGAGTTCGTGTCTGAACCAACCAGTAGTATGTCATGTTATTGTCTTTTGG
ATATACAAGAGGTGAGTTGGTCAAAGAATAGGTCCCATTCACCTTCAGGT
GCATTTCCGACGGGAGCGTATGCTGAAACAAGAAATA Run BLAST on NCBI protein sequence of TCONS_00039618-protein >TCONS_00039618-protein ID=TCONS_00039618-protein|Name=TCONS_00039618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
XTNDMSEEDSNEIHSLIDEANDHIDEFIVEDCPLSEISRSIDFLENLRKV
LRDKARAAKIDLVANTHPLAVLTNTGLFNIRTCLTKAKAQKNTLIAADTK
PIILPSTNDDLPAAFIIKDINQNLKEVKTFITQDVTDIAKVTDKQLIQIK
KDIPSVFDKLDKIALKYEKLLQLIIVDETILAEVPKIDKLYETLNSFKSD
FASKVSTEYNKRELDKNYDTKLLHIKLDKFSGYDSATDFYTFRNNFEKLH
LINTPTRLLPDLLKNNYLSEPALSLVKSFDTIDEIWTKLENAYGNTKTML
HKKLQTLSLSELKSSRDPEKLVHSLSKFKNIIREAMSLAKKLLANLYFSN
ALSDIYQQLGDGRFTRFLATIDDKXQLVMAVRLLVER Run BLAST on NCBI transcript from alignment at sc0002149:10802..12188 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039618 ID=TCONS_00039618|Name=TCONS_00039618|organism=Clytia hemisphaerica|type=transcript|length=1387bp|location=Sequence derived from alignment at sc0002149:10802..12188 (Clytia hemisphaerica)
TATTTCTTGTTTCAGCATACGCTCCCGTCGGAAATGCACCTGAAGGTGAA
TGGGACCTATTCTTTGACCAACTCACCTCTTGTATATCCAAAAGACAATA
ACATGACATACTACTGGTTGGTTCAGACACGAACTCGAGTATGGGTACCT
CGTCCGAAACAGAGGATCCTATTGGTAATTTTGGTATTTCTCACATCAAC
GAATCGGGTAAGCGTTTTCGATCTtatctttctaccaataacCTTACTGC
CATGACAAGCTGCTNCTTGTCGTCGATTGTTGCAAGGAATCTTGTGAATC
GTCCATCACCAAGTTGTTGATAGATGTCCGATAGGGCATTGCTGAAGTAG
AGATTGGCAAGTAGCTTCTTGGCAAGTGACATGGCTTCACGAATGATGTT
CTTAAACTTGCTTAACGAATGAACAAGTTTTTCAGGATCACGTGACGACT
TGAGTTCGGATAGGGACAGAGTCTGGAGTTTCTTGTGAAGCATTGTTTTG
GTATTGCCATAAGCATTCTCCAGTTTGGTCCATATTTCGTCAATGGTATC
AAATGATTTGACAAGGCTGAGAGCTGGCTCGGATAGATAATTGTTCTTGA
GCAGGTCAGGAAGCAGTCGAGTTGGTGTGTTGATGAGATGGAGCTTCTCG
AAGTTGTTGCGAAATGTGTAGAAGTCAGTGGCTGAATCATAACCACTGAA
TTTATCAAGCTTGATATGCAAAAGCTTTGTGTCATAGTTCTTGTCGAGCT
CTCTCTTGTTGTACTCTGTGCTCACTTTGGATGCAAAGTCAGATTTGAAG
GAATTTAAAGTCTCATAAAGTTTATCAATCTTTGGGACTTCTGCCAGAAT
GGTCTCATCAACAATTATCAGTTGTAAAAGTTTCTCATACTTCAAGGCGA
TCTTGTCTAACTTGTCGAAAACACTGGGAATGTCTTTCTTGATTTGAATC
AGTTGTTTATCAGTAACCTTGGCGATATCAGTGACATCTTGAGTAATGAA
GGTTTTGACTTCTTTCAGGTTTTGGTTGATGTCTTTGATGATGAATGCAG
CAGGAAGATCGTCGTTTGTAGACGGTAAGATGATTGGTTTGGTGTCAGCT
GCGATGAGTGTATTCTTCTGGGCTTTTGCTTTGGTAAGACATGTCCTGAT
ATTGAACAAGCCTGTATTGGTCAAAACAGCTAGTGGATGAGTGTTGGCCA
CAAGATCGATCTTGGCAGCACGTGCTTTGTCTCGAAGAACCTTGCGAAGA
TTTTCAAGGAAGTCGATGGATCTCGAGATCTCGGAAAGAGGGCAGTCTTC
GACTATGAATTCATCGATATGATCGTTTGCTTCGTCGATAAGACTGTGGA
TTTCGTTGCTGTCTTCTTCTGACATGTCGTTAGTTGN Coding sequence (CDS) from alignment at sc0002149:10802..12188 >TCONS_00039618 ID=TCONS_00039618|Name=TCONS_00039618|organism=Clytia hemisphaerica|type=CDS|length=1164bp|location=Sequence derived from alignment at sc0002149:10802..12188 (Clytia hemisphaerica)
TtatctttctaccaataacCTTACTGCCATGACAAGCTGCTNCTTGTCGT
CGATTGTTGCAAGGAATCTTGTGAATCGTCCATCACCAAGTTGTTGATAG
ATGTCCGATAGGGCATTGCTGAAGTAGAGATTGGCAAGTAGCTTCTTGGC
AAGTGACATGGCTTCACGAATGATGTTCTTAAACTTGCTTAACGAATGAA
CAAGTTTTTCAGGATCACGTGACGACTTGAGTTCGGATAGGGACAGAGTC
TGGAGTTTCTTGTGAAGCATTGTTTTGGTATTGCCATAAGCATTCTCCAG
TTTGGTCCATATTTCGTCAATGGTATCAAATGATTTGACAAGGCTGAGAG
CTGGCTCGGATAGATAATTGTTCTTGAGCAGGTCAGGAAGCAGTCGAGTT
GGTGTGTTGATGAGATGGAGCTTCTCGAAGTTGTTGCGAAATGTGTAGAA
GTCAGTGGCTGAATCATAACCACTGAATTTATCAAGCTTGATATGCAAAA
GCTTTGTGTCATAGTTCTTGTCGAGCTCTCTCTTGTTGTACTCTGTGCTC
ACTTTGGATGCAAAGTCAGATTTGAAGGAATTTAAAGTCTCATAAAGTTT
ATCAATCTTTGGGACTTCTGCCAGAATGGTCTCATCAACAATTATCAGTT
GTAAAAGTTTCTCATACTTCAAGGCGATCTTGTCTAACTTGTCGAAAACA
CTGGGAATGTCTTTCTTGATTTGAATCAGTTGTTTATCAGTAACCTTGGC
GATATCAGTGACATCTTGAGTAATGAAGGTTTTGACTTCTTTCAGGTTTT
GGTTGATGTCTTTGATGATGAATGCAGCAGGAAGATCGTCGTTTGTAGAC
GGTAAGATGATTGGTTTGGTGTCAGCTGCGATGAGTGTATTCTTCTGGGC
TTTTGCTTTGGTAAGACATGTCCTGATATTGAACAAGCCTGTATTGGTCA
AAACAGCTAGTGGATGAGTGTTGGCCACAAGATCGATCTTGGCAGCACGT
GCTTTGTCTCGAAGAACCTTGCGAAGATTTTCAAGGAAGTCGATGGATCT
CGAGATCTCGGAAAGAGGGCAGTCTTCGACTATGAATTCATCGATATGAT
CGTTTGCTTCGTCGATAAGACTGTGGATTTCGTTGCTGTCTTCTTCTGAC
ATGTCGTTAGTTGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039618-exon-sc0002149-1491911889:10802..12188 | TCONS_00039618-exon-sc0002149-1491911889:10802..12188 | Clytia hemisphaerica | exon |
| TCONS_00039618-exon-sc0002149-1510915933:10802..12188 | TCONS_00039618-exon-sc0002149-1510915933:10802..12188 | Clytia hemisphaerica | exon |
| TCONS_00039618-exon-sc0002149-1575043694:10802..12188 | TCONS_00039618-exon-sc0002149-1575043694:10802..12188 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002149 | supercontig | sc0002149:10802..12188 . |
Blast
The following BLAST results are available for this feature:
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