TCONS_00039617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039617
Unique NameTCONS_00039617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039617 ID=TCONS_00039617|Name=TCONS_00039617|organism=Clytia hemisphaerica|type=transcript|length=500bp
CCGTGCTCCAACAGTTCGTTTCCGCTTCGCCATGTTTCTTGGACACACAT
TGCAATAGCGTTTCTTTCCTTCATTACATTTAACAAAATTTCGATACGAG
TATCATTTTTCATACCCCGAACGTTTTGAGATAATATTTTGACTGTCCTG
ATAATGTGTCTGTTTCTTGCTTTTGCCATTACTGCCTTCCAAGCTTGCGA
GGCCTGGAGGAAACAGCGGAGATTAAAAGTCCAATTCTACTTGAGTGGAA
ACCAGTGTGATTCGCGTTAACTCGAAGTCTGATGAAAAGGACGTCTCCTT
CTTCTGTGCTAGATGTTTGTCATATCCATANCCAGTGTGATTCGCGTTAA
CTCGAAGTCTGATGAAAAGGACGTCTCCTTCTTCTGTGCTAGATGTTTGT
CATATCCATATTGTGTTGTTCCTCTTCTTCTGGGTGTGGTGGCTGACGGA
CCTTGTGATGCCGATTCAGGTGGCCACCACaccctatttttaggtttaag
Run BLAST on NCBI

transcript from alignment at sc0002149:9989..10488

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039617 ID=TCONS_00039617|Name=TCONS_00039617|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at sc0002149:9989..10488 (Clytia hemisphaerica)
cttaaacctaaaaatagggtGTGGTGGCCACCTGAATCGGCATCACAAGG
TCCGTCAGCCACCACACCCAGAAGAAGAGGAACAACACAATATGGATATG
ACAAACATCTAGCACAGAAGAAGGAGACGTCCTTTTCATCAGACTTCGAG
TTAACGCGAATCACACTGGNTATGGATATGACAAACATCTAGCACAGAAG
AAGGAGACGTCCTTTTCATCAGACTTCGAGTTAACGCGAATCACACTGGT
TTCCACTCAAGTAGAATTGGACTTTTAATCTCCGCTGTTTCCTCCAGGCC
TCGCAAGCTTGGAAGGCAGTAATGGCAAAAGCAAGAAACAGACACATTAT
CAGGACAGTCAAAATATTATCTCAAAACGTTCGGGGTATGAAAAATGATA
CTCGTATCGAAATTTTGTTAAATGTAATGAAGGAAAGAAACGCTATTGCA
ATGTGTGTCCAAGAAACATGGCGAAGCGGAAACGAACTGTTGGAGCACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023932XLOC_023932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039617-exon-sc0002149-1491911889:9989..10488TCONS_00039617-exon-sc0002149-1491911889:9989..10488Clytia hemisphaericaexon
TCONS_00039617-exon-sc0002149-1510915933:9989..10488TCONS_00039617-exon-sc0002149-1510915933:9989..10488Clytia hemisphaericaexon
TCONS_00039617-exon-sc0002149-1575043694:9989..10488TCONS_00039617-exon-sc0002149-1575043694:9989..10488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002149supercontigsc0002149:9989..10488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.156743	0.146741	0.513684	1.03724	0.278292	0.222351	0.398371	0.48789	0	0.397106	0.69078	0.216651	0	0.430466	0.449847	0.172487	0	0.518581	1.03786	0.678284	0	0.17841	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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