TCONS_00039615 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039615
Unique NameTCONS_00039615
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039615 ID=TCONS_00039615|Name=TCONS_00039615|organism=Clytia hemisphaerica|type=transcript|length=1468bp
CCCGTGtgtatttgacatttttggatTGCTACAAAACCCAAACAACCATC
GAAATAAGGCAGCTTGCTTGTAATGCATCTGATATGTATCGAAGAGAGGG
GATTCCCATCCTGGCCAAAGCAGTTGAGATAATGACACAAAAAGAAGTAG
AAGAAGGTTCAACAGCTGTAGTCGATCAAAAGTCAGGGCTCAAACTTTCC
ATATTGAATATGATTAAGCTTACTGGAAAGTTTTTGATTGGGCACTATCT
GATTAATAATCAAGACTGCAGATCAGATTTTGTGGTGATGTTCCTTAAGG
TCTTGAAGAGTTTTGAAAACGATCTTTTCGGAGATGCGTATTATGCGGTC
AGTTACCAACGAAATACCGTCTTAAGAAAACCCGTCCAGCTCCCAAAAGA
AGAAGATGTACAGCTACTTTTGCAAGAGTGTGACTCAACAATGGCCAAAG
TGGACCCATTATCACTGAAGATATCTGATGCATCTTATTGTAATCTTAGA
GCTGCCGTTGTTACATGCTTAATTGTATTTAACGCAAGAAGGGGTGGCGA
ACCAGGCAGACTTTCAATAAGCCAGTGGGAAGAAGCGCTGAAAGGCGAGT
GGGTTGACCACGATGACGTCCCAGATTTCGATAATGATACTATGCTGATT
ACCTACCAGACAGGAAAAGGAAACCATCATTTGGTACCAGTGATATTCCC
TTTTGAAACGCATCGATCTATCAAGCATTTAGCTGATCCTGAAGTCAGAG
CTGCTGCTGGTGTTGCTAAAAACAATTCATTTCTATTTCCTGCAACCATG
AATGGCGAAGGTCATGCAAGTGGTTGGCATTCTATTAACGAGATTCTTGA
AAAGCTTTCACTCAAGGGTGCTTTTAATCCAACAAAGAACAGGCACCGTG
TCGCCTCACTTTTGGCAAGATTAGAACTTTCAGACAAAGAAAAAGAGTTG
GTATATAAACACTTCGGACACTCTGAGATGGTCAACGAAGGCATTTATCA
AGCGGCTGGGGGTACTCAACAACTCCAATCCACTGGAGGTCTCCTGAAGC
AGATTTATGAGTCCACAAAGAGAATCTTGTAAAATCTAAAAACCCTAATG
TCTCGACTGACGCATCGAGAAAAGCCAAAGTCTCAACAGACGTATCGAGA
AAAGCCAAAGTCTCAACAGACGTATCGAGAAAAGCCAAAGTCTCAACTGA
CGTATCGAGAAAAGCCAAAGTCTCAACTGAGGAATCAAAATCTGAAgagA
GACCGAAGAAGCGAGAAAATCCAAAACGCAACAAAGAAAAAGCGAATTAC
ATTGAACGTGTGGAAGGAGAGTCGGATTCAGAATCAGAAGGAGAGGAATT
TCAGCCTGAAGgtgaaagtgaagaagaagtATCCGACGAAGAAGACAATG
TGAAAGGTATAATACGGTCTAATTGTGTAAAAAATGTGCACGAAGGCGTA
CAAGCATGAGACTTTACA
Run BLAST on NCBI

transcript from alignment at sc0002149:26018..28974-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039615 ID=TCONS_00039615|Name=TCONS_00039615|organism=Clytia hemisphaerica|type=transcript|length=2957bp|location=Sequence derived from alignment at sc0002149:26018..28974- (Clytia hemisphaerica)
CCCGTGTGTATTTGACATTTTTGGATTGCTACAAAACCCAAACAACCATC
GAAATAAGGCAGCTTGCTTGTAATGCATCTGATATGTATCGAAGAGAGGG
GATTCCCATCCTGGCCAAAGCAGTTGAGATAATGACACAAAAAGAAGTAG
AAGAAGGTTCAACAGCTGTAGTCGATCAAAAGTCAGGGCTCAAACTTTCC
ATATTGAATATGATTAAGCTTACTGGAAAGTTTTTGATTGGGCACTATCT
GATTAATAATCAAGACTGCAGATCAGATTTTGTGGTGATGTTCCTTAAGG
TATGTAATATGATGTATTTTTCATTTTCAGAACCAAAACCAAATAACTAA
AGTCATCAAAATATCTGAATCAAGTCTAGTGTAGTTAAATCAATTCAATT
TGGAATTTAATCAAATTATGTCTAGTGAACATATTTTTCAATTTTTTGAG
CTGGAATTTATTGTAGGATTTAATTGGGATTTCTGCGAAATTTTTGGCCT
ACAGAAACTTCTATCTACTCAATTGTTTTTCTCTTTCGTCATAACGATAT
AACTCGTAATAAGGATAAGGCTTGTTGACAAAAAAAGCTGTACTTAAAAC
AACAATGTATCAATAGACCACTGGAAAACTATTCTTACTGTTCTTATTTG
TAGGTCTTGAAGAGTTTTGAAAACGATCTTTTCGGAGATGCGTATTATGC
GGTCAGTTACCAACGAAATACCGTCTTAAGAAAACCCGTCCAGCTCCCAA
AAGAAGAAGATGTACAGCTACTTTTGCAAGAGTGTGACTCAACAATGGCC
AAAGTGGACCCATTATCACTGAAGATATCTGATGCATCTTATTGTAATCT
TAGAGCTGCCGTTGTTACATGCTTAATTGTATTTAACGCAAGAAGGGGTG
GCGAACCAGGCAGACTTTCAATAAGCCAGTGGGAAGAAGCGCTGAAAGGC
GAGTGGGTTGACCACGATGACGTCCCAGATTTCGATAATGATACTATGCT
GATTACCTACCAGACAGGAAAAGGAAACCATCATTTGGTACCAGTGATAT
TCCCTTTTGAAACGCATCGATCTATCAAGCATTTAGCTGATCCTGAAGTC
AGAGCTGCTGCTGGTGTTGCTAAAAACAATTCATTTCTATTTCCTGCAAC
CATGAATGGCGAAGGTCATGCAAGTGGTTGGCATTCTATTAACGAGATTC
TTGAAAAGCTTTCACTCAAGGGTGCTTTTAATCCAACAAAGAACAGGCAC
CGTGTCGCCTCACTTTTGGCAAGATTAGAACTTTCAGACAAAGAAAAAGA
GTTGGTATATAAACACTTCGGACACTCTGAGATGGTCAACGAAGGCATTT
ATCAAGCGGCTGGGGGTACTCAACAACTCCAATCCACTGGAGGTCTCCTG
AAGCAGATTTATGAGTCCACAAAGGTAACTAGAATTTATATTTTTGCCTT
ATTTCAATCTCGTCCCCGTGTATCCCAGCCTTTATCTACGTTACTGACGG
ACGCCAGAAAATACCCTGGTGTAGGGTTCTCAAAAGAATGCCGGGGTATT
CATGATATGCAACACTGGAAAGTTTTCTGAGAATTTTCAAAAATTTTAAA
CCCAATACGTCTATTGTTTAAGTGGTACGTATTGTGTAGAATATTTTAAA
AGCTCTTAGAAGGCTCACCAGTGTTGCATATCATGAATTATTTAGCGCCA
TATGTAAGCAACAAAAAGAGCTGATTTTGCGATGGGAACGAGCTTGGCCT
TACTTTAGAGACCCACTTTTTTTGCATGAAACTAATTGTTTCTAAGAGAA
ATATTTGAAAGTGTTATGTTGCTTTTCTAGCATTTCATTTTTTTCCCTTA
AATTTAACCATTTTATCCAAAATGAGGTGGTAAATAATAAATCTTCTAAG
GTTATTTATCATCAGTTCCCTCTCTTTTAGAATCTTGTAAAATCTAAAAA
CCCTAATGTCTCGACTGACGCATCGAGAAAAGCCAAAGTCTCAACAGACG
TATCGAGAAAAGCCAAAGTCTCAACAGACGTATCGAGAAAAGCCAAAGTC
TCAACTGACGTATCGAGAAAAGCCAAAGTCTCAACTGAGGAATCAAAATC
TGAAGGTATTTTAATTTTCATTCTGCTGATTATCTCAGAAACTGTGAAAA
GTCTCACAACCTTAAGCTTCACATACCAGATGTCATATTGAAATGATGAT
CCCAGCGAAAATTTCAACATAATTTCACTAGCAGTTCTGAAGGCATATCC
GCTCCAAAACTTAAGTGAGTCTGTTTTTTTTCTTCTTTTTTCAGAGAGAC
CGAAGAAGCGAGAAAATCCAAAACGCAACAAAGAAAAAGGTACTGTTTCA
TTTACAACAAACGTCTAGATCTAACACTTATTTTTCGATTTTTTTGTAAC
TTCAGAACTTTCTTTCCTCGCTTTCAAAATTTTGAATTTTTTTCCGACCA
TTACTTTACAAACGACAGTTTTCGTCAACTTTCTTGGTTATATTTTACTG
TATTGTTTTTTCTTACTCAGCGAATTACATTGAACGTGTGGAAGGAGAGT
CGGATTCAGGTATGTTTTAAAATATTTCTTTTGGTTATTCCTTTTTCTCT
TCGTGATTGTTGATTCTATAGCGGGACACTTTTACAATAAAGTTAACAAT
TTATGCAACCATGAACATGATGCAACTAAATGTTGTACTACCCTATATTC
ATATAGGGGCTTGAGTTGATTCAACTCGCTTAGCAAGGTTATTACTTTCA
ATTGGGAAAGCTTTTATCAAATTCTTTTCTGTCACAATTAATTCCTTTTA
CTCGTTTCTTTGATTTCAAGAATCAGAAGGAGAGGAATTTCAGCCTGAAG
GTGAAAGTGAAGAAGAAGTATCCGACGAAGAAGACAATGTGAAAGGTATA
ATACGGTCTAATTGTGTAAAAAATGTGCACGAAGGCGTACAAGCATGAGA
CTTTACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023930XLOC_023930Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039615-exon-sc0002149-1575043694:28676..28974TCONS_00039615-exon-sc0002149-1575043694:28676..28974Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1575043694:27551..28321TCONS_00039615-exon-sc0002149-1575043694:27551..28321Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1575043694:26870..27046TCONS_00039615-exon-sc0002149-1575043694:26870..27046Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1575043694:26636..26680TCONS_00039615-exon-sc0002149-1575043694:26636..26680Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1575043694:26416..26454TCONS_00039615-exon-sc0002149-1575043694:26416..26454Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1575043694:26018..26154TCONS_00039615-exon-sc0002149-1575043694:26018..26154Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1510915933:28676..28974TCONS_00039615-exon-sc0002149-1510915933:28676..28974Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1510915933:27551..28321TCONS_00039615-exon-sc0002149-1510915933:27551..28321Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1510915933:26870..27046TCONS_00039615-exon-sc0002149-1510915933:26870..27046Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1510915933:26636..26680TCONS_00039615-exon-sc0002149-1510915933:26636..26680Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1510915933:26416..26454TCONS_00039615-exon-sc0002149-1510915933:26416..26454Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1510915933:26018..26154TCONS_00039615-exon-sc0002149-1510915933:26018..26154Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1491911889:28676..28974TCONS_00039615-exon-sc0002149-1491911889:28676..28974Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1491911889:27551..28321TCONS_00039615-exon-sc0002149-1491911889:27551..28321Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1491911889:26870..27046TCONS_00039615-exon-sc0002149-1491911889:26870..27046Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1491911889:26636..26680TCONS_00039615-exon-sc0002149-1491911889:26636..26680Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1491911889:26416..26454TCONS_00039615-exon-sc0002149-1491911889:26416..26454Clytia hemisphaericaexon
TCONS_00039615-exon-sc0002149-1491911889:26018..26154TCONS_00039615-exon-sc0002149-1491911889:26018..26154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002149supercontigsc0002149:26018..28974 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.403685	0	0.199846	0	0.186021	0	0.272019	0.128573	0	0.130094	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039615 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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