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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039613 ID=TCONS_00039613|Name=TCONS_00039613|organism=Clytia hemisphaerica|type=transcript|length=487bp
CCCATCGTACAGGAATTCACATATCTTGGAAGTGTTATCAGTTGTGACTC
TTCAGATAACCTTGATGTTGATCGCAGAATACAAAAGGCTAGCAATGCGT
TCGGCATGATCAGAAATTCTTTGTTATCATCTTCCAAAATAAATGTTCAA
GTAAAAGCAAATGTTTATCAAACGTTCATATTGCCAATCTTGTTATATGG
TGTTGAATGTTGGTGTTTGACCGAGAAACTTTTGAATAAGCTCAGATCGT
TTCATCGACGATGTATTCGAAATATGTGTTGTGTGTCCCTCCGTGATCAT
AAACGCACTTCAGAGTTGTTAGAAAGGCTCTCGTTGGAGTCTATCGATAC
CTATATTTGTCGTCAACAACTCAGATGGGCTGGTCATGTTAAACGAATGC
CCTGGAATCGTCTTCCAAGGAAAATGTTATCATGCTGGGTTCGTGCGAAA
CGTCCTCGTGGTGCTCCGAGGTACACCTACGGTCGAT Run BLAST on NCBI protein sequence of TCONS_00039613-protein >TCONS_00039613-protein ID=TCONS_00039613-protein|Name=TCONS_00039613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
PIVQEFTYLGSVISCDSSDNLDVDRRIQKASNAFGMIRNSLLSSSKINVQ
VKANVYQTFILPILLYGVECWCLTEKLLNKLRSFHRRCIRNMCCVSLRDH
KRTSELLERLSLESIDTYICRQQLRWAGHVKRMPWNRLPRKMLSCWVRAK
RPRGAPRYTYGR Run BLAST on NCBI transcript from alignment at sc0002149:15882..17499+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039613 ID=TCONS_00039613|Name=TCONS_00039613|organism=Clytia hemisphaerica|type=transcript|length=1618bp|location=Sequence derived from alignment at sc0002149:15882..17499+ (Clytia hemisphaerica)
CCCATCGTACAGGAATTCACATATCTTGGAAGTGTTATCAGTTGTGACTC
TTCAGATAACCTTGATGTTGATCGCAGAATACAAAAGGCTAGCAATGCGT
TCGGCATGATCAGAAATTCTTTGTTATCATCTTCCAAAATAAATGTTCAA
GTAAAAGCAAATGTTTATCAAACGTTCATATTGCCAATCTTGTTATATGG
TGTTGAATGTTGGTGTTTGACCGAGAAACTTTTGAATAAGCTCAGATCGT
TTCATCGACGATGTATTCGAAATATGTGTTGTGTGTCCCTCCGTGATCAT
AAACGCACTTCAGAGTTGTTAGAAAGGCTCTCGTTGGAGTCTATCGATAC
CTATATTTGTCGTCAACAACTCAGATGGGCTGGTCATGTTAAACGAATGC
CCTGGAATCGTCTTCCAAGGAAAATGTTATCATGCTGGGTTCGTGCGAAA
CGTCCTCGTGGTGCTCCGAGGTACACCTATGGTCGATCTTTGAATAAATG
TATGAAAAAATTTGGAATAGATCCTAATGTTTGGCATGATTTAGCTATGA
ATAAATTAGAATGGAGAAAGTTGATTTATTCTGTGAAAATTGCCCCTTGA
TTGTTTACATTGATGATATTATTTTCGACTAGTATTTTCCACTAAGACTT
TactatattatttatttttgatagtAAAGTATTTTCATTAGTATTAGAAT
TTAATTTATGCGCTGTGATCCTCATAGTCAGCTATGGGGCCTATGCCTTT
TTTTTTGGGTAGGTTTAGTCTCTCTCTCCCCTTTCCCCGTGCGGTCGTCC
CGACGCCGAACCGAGTTCTTGTCCAACTTTTGATtctgtatttttcaatt
tttgtgtgaGAGGTTGTTTGCGACAAATGGTTTTTCACCTGTAGTGTATG
TGGGATTGTTATTACAATGTTCTTATTgcccttttgtactgtatttcgtt
gtagtgtctgtttgttgtttgttatttatttggaagctgctggtcagTAT
CTTTTTCTGTTATGTTTCCTGAAGGTGACTGAGTGTGGacccttaaacac
gtggaaagtcactatgccagtcacaagtctgggacttcaggttttgtttt
gtgtttgtatgttttttgatatatttgatgtgtttgcttgtgtatttgtc
cccattttgtatgtattttgatgaacttgtgtaaatgattgtacggaagt
ctgtttatcaaaaaagttttttgNTAATGCGTTCGGCACGATCAgaaatt
ctttgttttcatcttccaaaaaaatgttcgaGTAAAAGCAAATATTTATC
AAAAGTTCATATTGCCCATCTTGTTATATGGTGTTGAATGTTGGTGTTTG
ACCAAGAAACTTTTGAATAAGCTCAGATCGTTTCATCGACGATGTATTCG
AAATATATGTCGCGTGTCCCTCTGTGATCATAAACGCACTTCAGAGTTGT
TAGAAAGGCTCTCGTTGGAGTCTATCGATACCTATATTTGTCGTCAGCAA
CATAGATGGGCTGGTCATGTTATACTAATGCCCTGGAATCGTCATCCAAG
GAAAGTGTTATCATGTTGGGTGCGTGCGAAACGTCCTCGTGGTGCTCCGA
GGTACACCTACGGTCGAT Coding sequence (CDS) from alignment at sc0002149:15882..17499+ >TCONS_00039613 ID=TCONS_00039613|Name=TCONS_00039613|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0002149:15882..17499+ (Clytia hemisphaerica)
CCCATCGTACAGGAATTCACATATCTTGGAAGTGTTATCAGTTGTGACTC
TTCAGATAACCTTGATGTTGATCGCAGAATACAAAAGGCTAGCAATGCGT
TCGGCATGATCAGAAATTCTTTGTTATCATCTTCCAAAATAAATGTTCAA
GTAAAAGCAAATGTTTATCAAACGTTCATATTGCCAATCTTGTTATATGG
TGTTGAATGTTGGTGTTTGACCGAGAAACTTTTGAATAAGCTCAGATCGT
TTCATCGACGATGTATTCGAAATATGTGTTGTGTGTCCCTCCGTGATCAT
AAACGCACTTCAGAGTTGTTAGAAAGGCTCTCGTTGGAGTCTATCGATAC
CTATATTTGTCGTCAACAACTCAGATGGGCTGGTCATGTTAAACGAATGC
CCTGGAATCGTCTTCCAAGGAAAATGTTATCATGCTGGGTTCGTGCGAAA
CGTCCTCGTGGTGCTCCGAGGTACACCTACGGTCGACCCATCGTACAGGA
ATTCACATATCTTGGAAGTGTTATCAGTTGTGACTCTTCAGATAACCTTG
ATGTTGATCGCAGAATACAAAAGGCTAGCAATGCGTTCGGCATGATCAGA
AATTCTTTGTTATCATCTTCCAAAATAAATGTTCAAGTAAAAGCAAATGT
TTATCAAACGTTCATATTGCCAATCTTGTTATATGGTGTTGAATGTTGGT
GTTTGACCGAGAAACTTTTGAATAAGCTCAGATCGTTTCATCGACGATGT
ATTCGAAATATGTGTTGTGTGTCCCTCCGTGATCATAAACGCACTTCAGA
GTTGTTAGAAAGGCTCTCGTTGGAGTCTATCGATACCTATATTTGTCGTC
AACAACTCAGATGGGCTGGTCATGTTAAACGAATGCCCTGGAATCGTCTT
CCAAGGAAAATGTTATCATGCTGGGTTCGTGCGAAACGTCCTCGTGGTGC
TCCGAGGTACACCTACGGTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039613-exon-sc0002149-1491911889:15882..16351 | TCONS_00039613-exon-sc0002149-1491911889:15882..16351 | Clytia hemisphaerica | exon |
| TCONS_00039613-exon-sc0002149-1510915933:15882..16351 | TCONS_00039613-exon-sc0002149-1510915933:15882..16351 | Clytia hemisphaerica | exon |
| TCONS_00039613-exon-sc0002149-1575043694:15882..16351 | TCONS_00039613-exon-sc0002149-1575043694:15882..16351 | Clytia hemisphaerica | exon |
| TCONS_00039613-exon-sc0002149-1491911889:17483..17499 | TCONS_00039613-exon-sc0002149-1491911889:17483..17499 | Clytia hemisphaerica | exon |
| TCONS_00039613-exon-sc0002149-1510915933:17483..17499 | TCONS_00039613-exon-sc0002149-1510915933:17483..17499 | Clytia hemisphaerica | exon |
| TCONS_00039613-exon-sc0002149-1575043694:17483..17499 | TCONS_00039613-exon-sc0002149-1575043694:17483..17499 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002149 | supercontig | sc0002149:15882..17499 + |
Blast
The following BLAST results are available for this feature:
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