TCONS_00039611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039611
Unique NameTCONS_00039611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039611 ID=TCONS_00039611|Name=TCONS_00039611|organism=Clytia hemisphaerica|type=transcript|length=323bp
GTCATACCAAAACTTCTCTATGGCCTTGAATTAGTTGAACTTACAAAATC
AGAGATGGAGTACCTTGATTCTCAGGCAAGGGCTTGTTTAAAATCTCTAT
TCAACGTATCGAAGAGAAGCAAAAACGACATTTATCGACTGTACAGTATT
CCCAATGTATGCAGCATTATCGATGAACGTCGTCTGAACTTACTCAGGCA
GTTAGTGCTTAATGAATGTACCAAGAGTTATATCTGCTTTTTACTGTCTA
CTCATACGAACGTAGAATTCAGCTTTCTCGACAAATGTCAAAGAATAATC
GATCTTAACGACATATCCTTCNN
Run BLAST on NCBI

transcript from alignment at sc0002148:18003..18325

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039611 ID=TCONS_00039611|Name=TCONS_00039611|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0002148:18003..18325 (Clytia hemisphaerica)
NNGAAGGATATGTCGTTAAGATCGATTATTCTTTGACATTTGTCGAGAAA
GCTGAATTCTACGTTCGTATGAGTAGACAGTAAAAAGCAGATATAACTCT
TGGTACATTCATTAAGCACTAACTGCCTGAGTAAGTTCAGACGACGTTCA
TCGATAATGCTGCATACATTGGGAATACTGTACAGTCGATAAATGTCGTT
TTTGCTTCTCTTCGATACGTTGAATAGAGATTTTAAACAAGCCCTTGCCT
GAGAATCAAGGTACTCCATCTCTGATTTTGTAAGTTCAACTAATTCAAGG
CCATAGAGAAGTTTTGGTATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023927XLOC_023927Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039611-exon-sc0002148-1491911889:18003..18325TCONS_00039611-exon-sc0002148-1491911889:18003..18325Clytia hemisphaericaexon
TCONS_00039611-exon-sc0002148-1510915933:18003..18325TCONS_00039611-exon-sc0002148-1510915933:18003..18325Clytia hemisphaericaexon
TCONS_00039611-exon-sc0002148-1575043694:18003..18325TCONS_00039611-exon-sc0002148-1575043694:18003..18325Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002148supercontigsc0002148:18003..18325 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.404649	1.22956	0	0	8.0284	7.68627	6.38606	7.7613	6.09094	5.66782	2.78625	7.0899	4.52597	2.11738	3.00823	4.29529	1.63167	2.2959	5.75476	5.28866	3.58072	2.78644	2.74992	0	4.01682	2.90876	4.90496	0.38501	2.67267	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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