TCONS_00039610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039610
Unique NameTCONS_00039610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039610 ID=TCONS_00039610|Name=TCONS_00039610|organism=Clytia hemisphaerica|type=transcript|length=224bp
ttcaatttttaaattccaaattaccactttcacttttcatcatttccacA
CCATGTATCGCACCAccaaaaatgttatataaataccatactttccatta
aattttgagGATTTCTGTAGCCATTTCAGAGTTACATTCTCTGGGATAAG
ATTATCAAGTTTAACTTGTACTATAGAAAAAGCAGTGATCTGTTACCCAA
TGAATGTGAGCATAAACATATTGA
Run BLAST on NCBI

transcript from alignment at sc0002148:15188..15411

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039610 ID=TCONS_00039610|Name=TCONS_00039610|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at sc0002148:15188..15411 (Clytia hemisphaerica)
TCAATATGTTTATGCTCACATTCATTGGGTAACAGATCACTGCTTTTTCT
ATAGTACAAGTTAAACTTGATAATCTTATCCCAGAGAATGTAACTCTGAA
ATGGCTACAGAAATCctcaaaatttaatggaaagtatggtatttatataa
catttttggTGGTGCGATACATGGTgtggaaatgatgaaaagtgaaagtg
gtaatttggaatttaaaaattgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023926XLOC_023926Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039610-exon-sc0002148-1491911889:15188..15411TCONS_00039610-exon-sc0002148-1491911889:15188..15411Clytia hemisphaericaexon
TCONS_00039610-exon-sc0002148-1510915933:15188..15411TCONS_00039610-exon-sc0002148-1510915933:15188..15411Clytia hemisphaericaexon
TCONS_00039610-exon-sc0002148-1575043694:15188..15411TCONS_00039610-exon-sc0002148-1575043694:15188..15411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002148supercontigsc0002148:15188..15411 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01567	0.436187	0.859472	2.27728	0	0	0	0	0	6.04075	2.3544	0	0	0	1.54385	0.994344	0	0.516819	0	1.29251	1.349	0	0	7.44868	0	0	0	0	2.75222	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top