TCONS_00039609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039609
Unique NameTCONS_00039609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039609 ID=TCONS_00039609|Name=TCONS_00039609|organism=Clytia hemisphaerica|type=transcript|length=670bp
CGTGAAAATTGGTTCACATATCAGACTATTTTTTTTAGTATTCTTGATGG
TGAGCCAGTTACAGTGGAGCCTTTTGTTGACGGAGCCTTCATCAAGTATC
TTAATAATGATGGTGTATATACCATGTAAAGCAGTAAGAAATGACTTGAA
TTTCATGTATGACTGTATGAGAAGGCTGAAGCTCTTACACATTTTTCACA
CCAAGAAAGTGATGAGAAATTGCTCCTTGTCGACTTGCAAGGCAGCGGTT
AACACCTGGTACGATCCAGAAATTGCAACAGCAGATGAActtcaacaaaa
tgaaaatgaaagatatttttgtgCAGGAAATCTGAACGAAACTGCTTTCA
GCAACTTTTTCGATGCACTCAAGCGTAATATTTACTGTAGGCTTCTCGGA
TTAATAGAAGTGGAATTGGAGGATCCATCAGTAAATCCATAAAAGACTGT
CTGTCGAAAACATTATTTTATTCGCATTGTTTCTGGCTTTtctgtttgtt
tgaaaatttgctaccttaagggaacttattttggcgagtacTAATTTATA
TAAGTATACAAAACATTCTTTTGTAGTAGGAGGACCTTTCAATACAGTAA
TTTGTTTTAGTATTATTATAGTTCCATCAGTTCGAAAATgtttaaagttt
tatttcaagTGAAAACTTAT
Run BLAST on NCBI

protein sequence of TCONS_00039609-protein

>TCONS_00039609-protein ID=TCONS_00039609-protein|Name=TCONS_00039609-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
VKIGSHIRLFFLVFLMVSQLQWSLLLTEPSSSILIMMVYIPCKAVRNDLN
FMYDCMRRLKLLHIFHTKKVMRNCSLSTCKAAVNTWYDPEIATADELQQN
ENERYFCAGNLNETAFSNFFDALKRNIYCRLLGLIEVELEDPSVNP
Run BLAST on NCBI

transcript from alignment at sc0002148:11925..12594

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039609 ID=TCONS_00039609|Name=TCONS_00039609|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at sc0002148:11925..12594 (Clytia hemisphaerica)
ATAAGTTTTCActtgaaataaaactttaaacATTTTCGAACTGATGGAAC
TATAATAATACTAAAACAAATTACTGTATTGAAAGGTCCTCCTACTACAA
AAGAATGTTTTGTATACTTATATAAATTAgtactcgccaaaataagttcc
cttaaggtagcaaattttcaaacaaacagaAAAGCCAGAAACAATGCGAA
TAAAATAATGTTTTCGACAGACAGTCTTTTATGGATTTACTGATGGATCC
TCCAATTCCACTTCTATTAATCCGAGAAGCCTACAGTAAATATTACGCTT
GAGTGCATCGAAAAAGTTGCTGAAAGCAGTTTCGTTCAGATTTCCTGcac
aaaaatatctttcattttcattttgttgaagTTCATCTGCTGTTGCAATT
TCTGGATCGTACCAGGTGTTAACCGCTGCCTTGCAAGTCGACAAGGAGCA
ATTTCTCATCACTTTCTTGGTGTGAAAAATGTGTAAGAGCTTCAGCCTTC
TCATACAGTCATACATGAAATTCAAGTCATTTCTTACTGCTTTACATGGT
ATATACACCATCATTATTAAGATACTTGATGAAGGCTCCGTCAACAAAAG
GCTCCACTGTAACTGGCTCACCATCAAGAATACTAAAAAAAATAGTCTGA
TATGTGAACCAATTTTCACG

Coding sequence (CDS) from alignment at sc0002148:11925..12594

>TCONS_00039609 ID=TCONS_00039609|Name=TCONS_00039609|organism=Clytia hemisphaerica|type=CDS|length=441bp|location=Sequence derived from alignment at sc0002148:11925..12594 (Clytia hemisphaerica)
TTATGGATTTACTGATGGATCCTCCAATTCCACTTCTATTAATCCGAGAA
GCCTACAGTAAATATTACGCTTGAGTGCATCGAAAAAGTTGCTGAAAGCA
GTTTCGTTCAGATTTCCTGcacaaaaatatctttcattttcattttgttg
aagTTCATCTGCTGTTGCAATTTCTGGATCGTACCAGGTGTTAACCGCTG
CCTTGCAAGTCGACAAGGAGCAATTTCTCATCACTTTCTTGGTGTGAAAA
ATGTGTAAGAGCTTCAGCCTTCTCATACAGTCATACATGAAATTCAAGTC
ATTTCTTACTGCTTTACATGGTATATACACCATCATTATTAAGATACTTG
ATGAAGGCTCCGTCAACAAAAGGCTCCACTGTAACTGGCTCACCATCAAG
AATACTAAAAAAAATAGTCTGATATGTGAACCAATTTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023925XLOC_023925Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039609-proteinTCONS_00039609-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039609-exon-sc0002148-1491911889:11925..12594TCONS_00039609-exon-sc0002148-1491911889:11925..12594Clytia hemisphaericaexon
TCONS_00039609-exon-sc0002148-1510915933:11925..12594TCONS_00039609-exon-sc0002148-1510915933:11925..12594Clytia hemisphaericaexon
TCONS_00039609-exon-sc0002148-1575043694:11925..12594TCONS_00039609-exon-sc0002148-1575043694:11925..12594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002148supercontigsc0002148:11925..12594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.570266	1.26583	0.320569	0	2.70912	2.08	2.51211	3.2543	1.03625	1.52204	0.397862	1.74455	0.986974	0.6092	0.248618	0.901869	0.726563	0.934022	0.849729	0.353216	0.664971	0.904128	0.194555	1.18112	0.706055	1.21977	0	0.285353	0.110055	0.200834
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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