TCONS_00039607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039607
Unique NameTCONS_00039607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039607 ID=TCONS_00039607|Name=TCONS_00039607|organism=Clytia hemisphaerica|type=transcript|length=573bp
GATGGAATCTTGACTCTAAATTTAGTATCAAAGCCACCACGTAATTTGAC
TGTATGGTCAATCAGAGAAATAGATTGttataattttttggatgaccgAA
TTGAAATGAAAGAATCATTGACCGTTAGTGGGGTGGCTAATGCTGTTTCA
GAATTAGTTGGTTTTCCAGTTTGCCTTAGACAATGGCCTGCCGAATATCT
GATACCGGGAGATCATTCGTATCTTTATCAAATGAAGAGAAAAATCGGCT
TTCAAAATACTGTTAGACTTTACGTTGATCGAAGTATTTGCGTGAAACTT
CTTTCTTGTAAACAATGCGGAAACTCCGAAATCATGGAAGAGCTTGTTAC
GATTCGTTTTTCTAGTGATGCTGTAAGAGAAATTATCAAGCGATTAAATT
TGGAATTAGGAGACAAGTACTGTTGCGATAAAGTCAGTTGGAAACTATCT
ACAAACAATCCGCGGGATTTTAATCCTGGTACAATCTTATCGGATATTGC
GAAGGACttagttttgaattttcaagccGTTCGATCGATGTCATTatctt
tgaaaaagatttttcaaagttaa
Run BLAST on NCBI

protein sequence of TCONS_00039607-protein

>TCONS_00039607-protein ID=TCONS_00039607-protein|Name=TCONS_00039607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
DGILTLNLVSKPPRNLTVWSIREIDCYNFLDDRIEMKESLTVSGVANAVS
ELVGFPVCLRQWPAEYLIPGDHSYLYQMKRKIGFQNTVRLYVDRSICVKL
LSCKQCGNSEIMEELVTIRFSSDAVREIIKRLNLELGDKYCCDKVSWKLS
TNNPRDFNPGTILSDIAKDLVLNFQAVRSMSLSLKKIFQS
Run BLAST on NCBI

transcript from alignment at sc0002148:2349..2921

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039607 ID=TCONS_00039607|Name=TCONS_00039607|organism=Clytia hemisphaerica|type=transcript|length=573bp|location=Sequence derived from alignment at sc0002148:2349..2921 (Clytia hemisphaerica)
ttaactttgaaaaatctttttcaaagatAATGACATCGATCGAACggctt
gaaaattcaaaactaaGTCCTTCGCAATATCCGATAAGATTGTACCAGGA
TTAAAATCCCGCGGATTGTTTGTAGATAGTTTCCAACTGACTTTATCGCA
ACAGTACTTGTCTCCTAATTCCAAATTTAATCGCTTGATAATTTCTCTTA
CAGCATCACTAGAAAAACGAATCGTAACAAGCTCTTCCATGATTTCGGAG
TTTCCGCATTGTTTACAAGAAAGAAGTTTCACGCAAATACTTCGATCAAC
GTAAAGTCTAACAGTATTTTGAAAGCCGATTTTTCTCTTCATTTGATAAA
GATACGAATGATCTCCCGGTATCAGATATTCGGCAGGCCATTGTCTAAGG
CAAACTGGAAAACCAACTAATTCTGAAACAGCATTAGCCACCCCACTAAC
GGTCAATGATTCTTTCATTTCAATTcggtcatccaaaaaattataaCAAT
CTATTTCTCTGATTGACCATACAGTCAAATTACGTGGTGGCTTTGATACT
AAATTTAGAGTCAAGATTCCATC

Coding sequence (CDS) from alignment at sc0002148:2349..2921

>TCONS_00039607 ID=TCONS_00039607|Name=TCONS_00039607|organism=Clytia hemisphaerica|type=CDS|length=573bp|location=Sequence derived from alignment at sc0002148:2349..2921 (Clytia hemisphaerica)
ttaactttgaaaaatctttttcaaagatAATGACATCGATCGAACggctt
gaaaattcaaaactaaGTCCTTCGCAATATCCGATAAGATTGTACCAGGA
TTAAAATCCCGCGGATTGTTTGTAGATAGTTTCCAACTGACTTTATCGCA
ACAGTACTTGTCTCCTAATTCCAAATTTAATCGCTTGATAATTTCTCTTA
CAGCATCACTAGAAAAACGAATCGTAACAAGCTCTTCCATGATTTCGGAG
TTTCCGCATTGTTTACAAGAAAGAAGTTTCACGCAAATACTTCGATCAAC
GTAAAGTCTAACAGTATTTTGAAAGCCGATTTTTCTCTTCATTTGATAAA
GATACGAATGATCTCCCGGTATCAGATATTCGGCAGGCCATTGTCTAAGG
CAAACTGGAAAACCAACTAATTCTGAAACAGCATTAGCCACCCCACTAAC
GGTCAATGATTCTTTCATTTCAATTcggtcatccaaaaaattataaCAAT
CTATTTCTCTGATTGACCATACAGTCAAATTACGTGGTGGCTTTGATACT
AAATTTAGAGTCAAGATTCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023923XLOC_023923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039607-exon-sc0002148-1491911889:2349..2921TCONS_00039607-exon-sc0002148-1491911889:2349..2921Clytia hemisphaericaexon
TCONS_00039607-exon-sc0002148-1510915933:2349..2921TCONS_00039607-exon-sc0002148-1510915933:2349..2921Clytia hemisphaericaexon
TCONS_00039607-exon-sc0002148-1575043694:2349..2921TCONS_00039607-exon-sc0002148-1575043694:2349..2921Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039607-proteinTCONS_00039607-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002148supercontigsc0002148:2349..2921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.51025	3.46342	2.79875	2.62941	3.53068	2.07416	2.13024	2.98882	1.51389	5.00805	2.27667	2.64587	4.59231	2.12974	6.385	12.7127	4.94937	7.23636	12.5138	9.36887	7.35521	6.90771	8.46018	8.06271	0	0	5.80205	4.09524	10.1588	8.14712
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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