TCONS_00039601 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039601
Unique NameTCONS_00039601
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039601 ID=TCONS_00039601|Name=TCONS_00039601|organism=Clytia hemisphaerica|type=transcript|length=1318bp
CAATGATACCAAGTACAATGTATTTCTTTCATTCCATCCCCTTACAAAAG
TTTCGAATGCTTGAGTTGAGTTGGAGGGGCATGACTATAAAGAGAGGAGA
AAGGGTTTTAAGAATCATTCAATTCTGAAGATCACCAAAAGAGAGATATC
AAATAGAAGATTTATTACTGCGAGAAGCAAGACAGTAAAAGATGAAACTT
CTTTGCTTGGTACTACTTTGCTTTTTCATATCAACTGCAAAAGCTAACCA
AAACGCAAATGAAAAATCGCATGACGGTGAACTTGTGTCaagattgaaat
ttgaaaatgttgaagatGCCACCATAAACGATCATAAAGAAGATCAAAAA
GAAGATTTGGAAAATGACGATAATAATGACAATGATAACGATAATGACGA
TgagaatgaagaagaaaatgaagaggaaGACAACACAGATAACGATAATG
ATGATGACGAAATAAAAGATCGCCAGCTTCAAAATGCCGACCCCGATCAT
CCCCTTAAAGtgcAAAAGGATCCCAGAGTCGAACGATTGCTTGTACGGGG
GGGCGAGAACTGCCTTGAAGTTTCGCCGTGCTACTGGTTTCCGAGTACGT
CGAACCTTCCGTCACGTTCGACGTGCGTTTAGAAGGTCTCGACGTGGAGG
ACGTCGATCCAGACGTAACAGAAGAGGTGGACCCCGTGGAGGTAGAAGAG
GACGCCGTGGTGGAAGACGGGGACGCAGAGGTCGACGTGGACGTGGACGT
GGACGGGGAAGACGTGGAAGACGATGGGGGTAATTTTgtgacttgaagaa
aaatttcacTACAAATTAGTAtgattattaatttcgccttagcgaaagta
ttacaataggCATGGTGCGGCGATATCggaagaaaatttagaaaacgaaa
gtacttgatacggtggacgaactcactaaaatcaatttacaaattacacg
ctcgtataaccactgAAGATCTTTgcaggttttctttggattacgtcatt
atatttttgtgtctttagcttcacagttttgatttttctttattttctta
taagcatatactttataagaatcaaaNtttttctttattttcttataagc
atatactttataagaatcaaatcaataactcttgatagacggtgatatac
ctttcagtaattagttcttacaaagtaaacaaggggtgaagcacaatatg
agcatatttatttttcttataagcatatactttataggcatcaaatcaat
aactcttgatagacggtgacatacctttcggtaattagttcttacaaagt
gaacaagggatggggcac
Run BLAST on NCBI

protein sequence of TCONS_00039601-protein

>TCONS_00039601-protein ID=TCONS_00039601-protein|Name=TCONS_00039601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MKLLCLVLLCFFISTAKANQNANEKSHDGELVSRLKFENVEDATINDHKE
DQKEDLENDDNNDNDNDNDDENEEENEEEDNTDNDNDDDEIKDRQLQNAD
PDHPLKVQKDPRVERLLVRGGENCLEVSPCYWFPSTSNLPSRSTCV
Run BLAST on NCBI

transcript from alignment at sc0002147:5660..7477-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039601 ID=TCONS_00039601|Name=TCONS_00039601|organism=Clytia hemisphaerica|type=transcript|length=1818bp|location=Sequence derived from alignment at sc0002147:5660..7477- (Clytia hemisphaerica)
CAATGATACCAAGTACAATGTATTTCTTTCATTCCATCCCCTTACAAAAG
TTTCGAATGCTTGAGTTGAGTTGGAGGGGCATGACTATAAAGAGAGGAGA
AAGGGTTTTAAGAATCATTCAATTCTGAAGATCACCAAAAGAGAGATATC
AAATAGAAGATTTATTACTGCGAGAAGCAAGACAGTAAAAGATGAAACTT
CTTTGCTTGGTACTACTTTGCTTTTTCATATCAACTGCAAAAGGTAAGCC
TTACTTTGATTTTTCTCTCCTAACCAATGATCAACGGATAATGGCCATTT
GAACTACTCATTTACGTTGCCTTTCAGAAAAGTTGCAATTATTCGGGAGG
TTAAATTGCGGACTGCTCCCATCTCAATTTTATGTTGAAGGAATAAATCT
TTTTTAAACCCTGATTTGTTTTACTTAGCTAACCAAAACGCAAATGAAAA
ATCGCATGACGGTGAACTTGTGTCAAGATTGAAATTTGAAAATGTTGAAG
ATGCCACCATAAACGATCATAAAGAAGATCAAAAAGAAGATTTGGAAAAT
GACGATAATAATGACAATGATAACGATAATGACGATGAGAATGAAGAAGA
AAATGAAGAGGAAGACAACACAGATAACGATAATGATGATGACGAAATAA
AAGATCGCCAGCTTCAAAATGCCGACCCCGATCATCCCCTTAAAGGTATT
AAATACGTTGAAAGGTCTTTTGTATGATAGGAAAAAATCACCAGGTAGAA
GAAGGGACTCAGAATCAAAATTTTTGAACACAATCTACATAAGCATACTT
CCACTTTCTTAGTTAGAGGCTAATGTTGAATATATTTTTACAGAATACAA
GAATAATTTTCTCGCAATAAATAAATTTTGTAAAGCCAGAAAGTAAATGC
CTTGATAATAAAGTCGGTCGAGGAAAATTGCTAAATTCACTGTAACGAAA
AACATATTTTCAAAAACCAAATATTGCCTGTCAAAATAAAAAGTTTTTTT
TTATAAATAGTGCAAAAGGATCCCAGAGTCGAACGATTGCTTGTACGGGG
GGGCGAGAACTGCCTTGAAGTTTCGCCGTGCTACTGGTTTCCGAGTACGT
CGAACCTTCCGTCACGTTCGACGTGCGTTTAGAAGGTCTCGACGTGGAGG
ACGTCGATCCAGACGTAACAGAAGAGGTGGACCCCGTGGAGGTAGAAGAG
GACGCCGTGGTGGAAGACGGGGACGCAGAGGTCGACGTGGACGTGGACGT
GGACGGGGAAGACGTGGAAGACGATGGGGGTAATTTTGTGACTTGAAGAA
AAATTTCACTACAAATTAGTATGATTATTAATTTCGCCTTAGCGAAAGTA
TTACAATAGGCATGGTGCGGCGATATCGGAAGAAAATTTAGAAAACGAAA
GTACTTGATACGGTGGACGAACTCACTAAAATCAATTTACAAATTACACG
CTCGTATAACCACTGAAGATCTTTGCAGGTTTTCTTTGGATTACGTCATT
ATATTTTTGTGTCTTTAGCTTCACAGTTTTGATTTTTCTTTATTTTCTTA
TAAGCATATACTTTATAAGAATCAAANTTTTTCTTTATTTTCTTATAAGC
ATATACTTTATAAGAATCAAATCAATAACTCTTGATAGACGGTGATATAC
CTTTCAGTAATTAGTTCTTACAAAGTAAACAAGGGGTGAAGCACAATATG
AGCATATTTATTTTTCTTATAAGCATATACTTTATAGGCATCAAATCAAT
AACTCTTGATAGACGGTGACATACCTTTCGGTAATTAGTTCTTACAAAGT
GAACAAGGGATGGGGCAC

Coding sequence (CDS) from alignment at sc0002147:5660..7477-

>TCONS_00039601 ID=TCONS_00039601|Name=TCONS_00039601|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0002147:5660..7477- (Clytia hemisphaerica)
TGCAAAAGGATCCCAGAGTCGAACGATTGCTTGTACGGGGGGGCGAGAAC
TGCCTTGAAGTTTCGCCGTGCTACTGGTTTCCGAGTACGTCGAACCTTCC
GTCACGTTCGACGTGCGTTTAGCTAACCAAAACGCAAATGAAAAATCGCA
TGACGGTGAACTTGTGTCAAGATTGAAATTTGAAAATGTTGAAGATGCCA
CCATAAACGATCATAAAGAAGATCAAAAAGAAGATTTGGAAAATGACGAT
AATAATGACAATGATAACGATAATGACGATGAGAATGAAGAAGAAAATGA
AGAGGAAGACAACACAGATAACGATAATGATGATGACGAAATAAAAGATC
GCCAGCTTCAAAATGCCGACCCCGATCATCCCCTTAAAGATGAAACTTCT
TTGCTTGGTACTACTTTGCTTTTTCATATCAACTGCAAAAGTGCAAAAGG
ATCCCAGAGTCGAACGATTGCTTGTACGGGGGGGCGAGAACTGCCTTGAA
GTTTCGCCGTGCTACTGGTTTCCGAGTACGTCGAACCTTCCGTCACGTTC
GACGTGCGTTTAGCTAACCAAAACGCAAATGAAAAATCGCATGACGGTGA
ACTTGTGTCAAGATTGAAATTTGAAAATGTTGAAGATGCCACCATAAACG
ATCATAAAGAAGATCAAAAAGAAGATTTGGAAAATGACGATAATAATGAC
AATGATAACGATAATGACGATGAGAATGAAGAAGAAAATGAAGAGGAAGA
CAACACAGATAACGATAATGATGATGACGAAATAAAAGATCGCCAGCTTC
AAAATGCCGACCCCGATCATCCCCTTAAAGATGAAACTTCTTTGCTTGGT
ACTACTTTGCTTTTTCATATCAACTGCAAAAGTGCAAAAGGATCCCAGAG
TCGAACGATTGCTTGTACGGGGGGGCGAGAACTGCCTTGAAGTTTCGCCG
TGCTACTGGTTTCCGAGTACGTCGAACCTTCCGTCACGTTCGACGTGCGT
TTAGCTAACCAAAACGCAAATGAAAAATCGCATGACGGTGAACTTGTGTC
AAGATTGAAATTTGAAAATGTTGAAGATGCCACCATAAACGATCATAAAG
AAGATCAAAAAGAAGATTTGGAAAATGACGATAATAATGACAATGATAAC
GATAATGACGATGAGAATGAAGAAGAAAATGAAGAGGAAGACAACACAGA
TAACGATAATGATGATGACGAAATAAAAGATCGCCAGCTTCAAAATGCCG
ACCCCGATCATCCCCTTAAAGATGAAACTTCTTTGCTTGGTACTACTTTG
CTTTTTCATATCAACTGCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023918XLOC_023918Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039601-proteinTCONS_00039601-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039601-exon-sc0002147-1575043694:7235..7477TCONS_00039601-exon-sc0002147-1575043694:7235..7477Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1575043694:6783..7049TCONS_00039601-exon-sc0002147-1575043694:6783..7049Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1575043694:5660..6467TCONS_00039601-exon-sc0002147-1575043694:5660..6467Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1510915933:7235..7477TCONS_00039601-exon-sc0002147-1510915933:7235..7477Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1510915933:6783..7049TCONS_00039601-exon-sc0002147-1510915933:6783..7049Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1510915933:5660..6467TCONS_00039601-exon-sc0002147-1510915933:5660..6467Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1491911889:7235..7477TCONS_00039601-exon-sc0002147-1491911889:7235..7477Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1491911889:6783..7049TCONS_00039601-exon-sc0002147-1491911889:6783..7049Clytia hemisphaericaexon
TCONS_00039601-exon-sc0002147-1491911889:5660..6467TCONS_00039601-exon-sc0002147-1491911889:5660..6467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002147supercontigsc0002147:5660..7477 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.74726	1.99467	4.13891	3.66601	4.73747	2.87689	6.65739	7.20991	2.72793	5.87054	3.63188	4.66289	13.1618	11.876	5.6541	3.83386	3.23771	5.53723	3.51303	4.70539	9.05573	7.67598	1.30413	2.01902	4.12497	5.61782	9.47277	11.2714	2.79909	2.19451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039601 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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