|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039597 ID=TCONS_00039597|Name=TCONS_00039597|organism=Clytia hemisphaerica|type=transcript|length=929bp
CTTAATTCTAAATTTGGGTTGATGCTTTTGATAACCGCCACTTGTATTTC
CCTATCCCCATACCCATGGGCACGAGCACTCCTGATCTGGTAGTAGAGAC
TGGTGTATGACATAGTATCTTTGTGTCCAGGCTCCACAAGCCGGCCACTA
AGTTTCAGTTCTTTCATGAAGACTTTGCGAAACCTCACCATCTCAGGGTC
CTCTTCCTCTTTCTCTCTATCTTCTCCACCACCCATGTTTCCCCTACTCC
CTAGTGATGGCAAACAGGAATCATTTGATTCTTCATCAGGTAAATCTATT
TCTGATATTAGACGTAGCATCAGACCTTTCATTTCTTGAAAGAACCCCTC
TACGACATCCTCCCCAGTGTCCCCCTCCTCTACATTACTGAGCTTTCGGA
CTACTTTTCGTTTAAGTTGCGAAGAAGTTTTGCCTTGATAGTCTTCAACG
TTAAGATGTTTGCAGGCATGCTCCAGGTGCGGTGCCCCAAGCTGATAAAC
CAGATCAAAAACCTCTCGCTCCAGATCCTCTTTGTTGTCTTCCATTGCCA
GCCAATTGTTTCACACGATCCACCAAATGATCCAACCACCAGTTGATTGA
TTGCCAATTGATCAAAACCACAATGATCCACCAATCACATCCACTGGAAC
TTCAGAACACTGGAGCTCAGGAACACTGGAACTCGGGAACTGTCAACTGA
TTGgtaaacaaccctctgctaccaATGTTGGGTCGGGTTATTTACAGGTG
CGGGTATCAGCTGACTGAGACGAGGAGGATTTACAAATCCTATGTATAAA
TCTCTTTCTCTAAAACATCTTGAGATATACCAAATCAAATATATGTACAA
GTTACAGTTTAGTTAAAGGCTTATCAGACGAAGCACTTTAACTTCACTTT
ATTTTGCTAGTCAAGATAACACTGACTCT Run BLAST on NCBI protein sequence of TCONS_00039597-protein >TCONS_00039597-protein ID=TCONS_00039597-protein|Name=TCONS_00039597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MEDNKEDLEREVFDLVYQLGAPHLEHACKHLNVEDYQGKTSSQLKRKVVR
KLSNVEEGDTGEDVVEGFFQEMKGLMLRLISEIDLPDEESNDSCLPSLGS
RGNMGGGEDREKEEEDPEMVRFRKVFMKELKLSGRLVEPGHKDTMSYTSL
YYQIRSARAHGYGDREIQVAVIKSINPNLEL Run BLAST on NCBI transcript from alignment at sc0002146:11602..12530 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039597 ID=TCONS_00039597|Name=TCONS_00039597|organism=Clytia hemisphaerica|type=transcript|length=929bp|location=Sequence derived from alignment at sc0002146:11602..12530 (Clytia hemisphaerica)
AGAGTCAGTGTTATCTTGACTAGCAAAATAAAGTGAAGTTAAAGTGCTTC
GTCTGATAAGCCTTTAACTAAACTGTAACTTGTACATATATTTGATTTGG
TATATCTCAAGATGTTTTAGAGAAAGAGATTTATACATAGGATTTGTAAA
TCCTCCTCGTCTCAGTCAGCTGATACCCGCACCTGTAAATAACCCGACCC
AACATtggtagcagagggttgtttacCAATCAGTTGACAGTTCCCGAGTT
CCAGTGTTCCTGAGCTCCAGTGTTCTGAAGTTCCAGTGGATGTGATTGGT
GGATCATTGTGGTTTTGATCAATTGGCAATCAATCAACTGGTGGTTGGAT
CATTTGGTGGATCGTGTGAAACAATTGGCTGGCAATGGAAGACAACAAAG
AGGATCTGGAGCGAGAGGTTTTTGATCTGGTTTATCAGCTTGGGGCACCG
CACCTGGAGCATGCCTGCAAACATCTTAACGTTGAAGACTATCAAGGCAA
AACTTCTTCGCAACTTAAACGAAAAGTAGTCCGAAAGCTCAGTAATGTAG
AGGAGGGGGACACTGGGGAGGATGTCGTAGAGGGGTTCTTTCAAGAAATG
AAAGGTCTGATGCTACGTCTAATATCAGAAATAGATTTACCTGATGAAGA
ATCAAATGATTCCTGTTTGCCATCACTAGGGAGTAGGGGAAACATGGGTG
GTGGAGAAGATAGAGAGAAAGAGGAAGAGGACCCTGAGATGGTGAGGTTT
CGCAAAGTCTTCATGAAAGAACTGAAACTTAGTGGCCGGCTTGTGGAGCC
TGGACACAAAGATACTATGTCATACACCAGTCTCTACTACCAGATCAGGA
GTGCTCGTGCCCATGGGTATGGGGATAGGGAAATACAAGTGGCGGTTATC
AAAAGCATCAACCCAAATTTAGAATTAAG Coding sequence (CDS) from alignment at sc0002146:11602..12530 >TCONS_00039597 ID=TCONS_00039597|Name=TCONS_00039597|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0002146:11602..12530 (Clytia hemisphaerica)
ATGGAAGACAACAAAGAGGATCTGGAGCGAGAGGTTTTTGATCTGGTTTA
TCAGCTTGGGGCACCGCACCTGGAGCATGCCTGCAAACATCTTAACGTTG
AAGACTATCAAGGCAAAACTTCTTCGCAACTTAAACGAAAAGTAGTCCGA
AAGCTCAGTAATGTAGAGGAGGGGGACACTGGGGAGGATGTCGTAGAGGG
GTTCTTTCAAGAAATGAAAGGTCTGATGCTACGTCTAATATCAGAAATAG
ATTTACCTGATGAAGAATCAAATGATTCCTGTTTGCCATCACTAGGGAGT
AGGGGAAACATGGGTGGTGGAGAAGATAGAGAGAAAGAGGAAGAGGACCC
TGAGATGGTGAGGTTTCGCAAAGTCTTCATGAAAGAACTGAAACTTAGTG
GCCGGCTTGTGGAGCCTGGACACAAAGATACTATGTCATACACCAGTCTC
TACTACCAGATCAGGAGTGCTCGTGCCCATGGGTATGGGGATAGGGAAAT
ACAAGTGGCGGTTATCAAAAGCATCAACCCAAATTTAGAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039597-exon-sc0002146-1491911889:11602..12530 | TCONS_00039597-exon-sc0002146-1491911889:11602..12530 | Clytia hemisphaerica | exon |
| TCONS_00039597-exon-sc0002146-1510915933:11602..12530 | TCONS_00039597-exon-sc0002146-1510915933:11602..12530 | Clytia hemisphaerica | exon |
| TCONS_00039597-exon-sc0002146-1575043694:11602..12530 | TCONS_00039597-exon-sc0002146-1575043694:11602..12530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002146 | supercontig | sc0002146:11602..12530 . |
Blast
The following BLAST results are available for this feature:
|
