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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039582 ID=TCONS_00039582|Name=TCONS_00039582|organism=Clytia hemisphaerica|type=transcript|length=1093bpRun BLAST on NCBI transcript from alignment at sc0002143:22674..27466- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039582 ID=TCONS_00039582|Name=TCONS_00039582|organism=Clytia hemisphaerica|type=transcript|length=4793bp|location=Sequence derived from alignment at sc0002143:22674..27466- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039582 vs. Swiss-Prot (Human)
Match: ZN782 (Zinc finger protein 782 OS=Homo sapiens GN=ZNF782 PE=2 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 6.788e-46 Identity = 95/202 (47.03%), Postives = 124/202 (61.39%), Query Frame = -2
Query: 4 NESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECGKSLATKIYLKK 609
++ H G K EC EC +SF K ++HQ T H FEC ECGKSF S L H+RT H G + + C ECGK+F K+ L H RT H G K +KC +CG FG+K L+ HHRI H G K ++C CGE+F+ K NL H T + G P++C+ECGK+F +KSN HQRT H G K ++C ECGK+ + K L+K
Sbjct: 440 HQRTHTGEKPFECHECGKSFNYKSILIVHQRT-HTGEKPFECNECGKSFSHMSGLRNHRRT-HTGERPYKCDECGKAFKLKSGLRKHHRT-HTGEKPYKCNQCGKAFGQKSQLRGHHRI-HTGEKPYKCNHCGEAFSQKSNLRVHHRT-HTGEKPYQCEECGKTFRQKSNLRGHQRT-HTGEKPYECNECGKAFSEKSVLRK 635 HSP 2 Score: 152.91 bits (385), Expect = 1.026e-40 Identity = 84/197 (42.64%), Postives = 121/197 (61.42%), Query Frame = -2
Query: 7 HEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECGKSLATKIYLK 597
H G + +C EC ++F K H T H ++C +CGK+FG+KS L H R +H G K + C+ CG++F QK+NL H RT H G K ++C+ECG F +K +L+ H R H G K +EC ECG++F+ K L KHQ T + G P+ C +CG++F +KSN HQRT H G K +KC +CG++ + K L+
Sbjct: 500 HTGERPYKCDECGKAFKLKSGLRKHHRT-HTGEKPYKCNQCGKAFGQKSQLRGHHR-IHTGEKPYKCNHCGEAFSQKSNLRVHHRT-HTGEKPYQCEECGKTFRQKSNLRGHQR-THTGEKPYECNECGKAFSEKSVLRKHQRT-HTGEKPYNCNQCGEAFSQKSNLRVHQRT-HTGEKPYKCDKCGRTFSQKSSLR 690 HSP 3 Score: 140.198 bits (352), Expect = 2.455e-36 Identity = 97/257 (37.74%), Postives = 126/257 (49.03%), Query Frame = -2
Query: 4 INDGMNCF-----------DQFSSIEEINSQIGEEITIKFDDELQKFQNNENESLHEGIKAIE----CQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECGKSLATKIYLKK 729
ND NCF FS I I +K + + F N +H+ A + C E+F + +HQ VH +E ECGKS S+L Q++ H G K + C ECGK+F +K+ L H+RT H G K +KC C F K L+ H R H G K FEC ECG+SF K L+ HQ T + G PFEC ECGKSF S +H+RT H G + +KC ECGK+ K L+K
Sbjct: 273 FNDTGNCFCRITHKTLTGGKSFSQKSHIREHHRVHIGVKPFEYGKSFNRNSTLPVHQRTHATDKYSDYHPCTETFSYQSTFSVHQ-KVHIRAKPYEYNECGKSCSMNSHLIWPQKS-HTGEKPYECPECGKAFSEKSRLRKHQRT-HTGEKPYKCDGCDKAFSAKSGLRIHQR-THTGEKPFECHECGKSFNYKSILIVHQRT-HTGEKPFECNECGKSFSHMSGLRNHRRT-HTGERPYKCDECGKAFKLKSGLRK 523 HSP 4 Score: 132.88 bits (333), Expect = 9.614e-34 Identity = 74/177 (41.81%), Postives = 106/177 (59.89%), Query Frame = -2
Query: 67 HEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQG 597
H G K +C +C ++F K H +H ++C CG++F +KSNL +H RT H G K + C ECGK+F QK+NL H+RT H G K ++C ECG F K L++H R H G K + C +CGE+F+ K NL HQ T + G P++C +CG++F +KS+ HQ+ H G
Sbjct: 528 HTGEKPYKCNQCGKAFGQKSQLRGHH-RIHTGEKPYKCNHCGEAFSQKSNLRVHHRT-HTGEKPYQCEECGKTFRQKSNLRGHQRT-HTGEKPYECNECGKAFSEKSVLRKHQR-THTGEKPYNCNQCGEAFSQKSNLRVHQRT-HTGEKPYKCDKCGRTFSQKSSLREHQK-AHPG 698 HSP 5 Score: 114.005 bits (284), Expect = 2.232e-27 Identity = 65/153 (42.48%), Postives = 93/153 (60.78%), Query Frame = -2
Query: 172 QKFQNNENESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQ 630
QK Q + +H G K +C C E+F K N +H T H ++C+ECGK+F +KSNL HQRT H G K + C+ECGK+F +K+ L H+RT H G K + C +CG F +K +L+ H R H G K ++C +CG +F+ K +L +HQ
Sbjct: 545 QKSQLRGHHRIHTGEKPYKCNHCGEAFSQKSNLRVHHRT-HTGEKPYQCEECGKTFRQKSNLRGHQRT-HTGEKPYECNECGKAFSEKSVLRKHQRT-HTGEKPYNCNQCGEAFSQKSNLRVHQR-THTGEKPYKCDKCGRTFSQKSSLREHQ 693 The following BLAST results are available for this feature:
BLAST of TCONS_00039582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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