TCONS_00039581 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039581
Unique NameTCONS_00039581
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039581 ID=TCONS_00039581|Name=TCONS_00039581|organism=Clytia hemisphaerica|type=transcript|length=722bp
CTGCCAAACATTTACTacattcttgacatttaaaGGCCTTAATACCTTGA
TGGACAGTTCTTTGGTGAGAAGTAAAGTTCGATTTCTTTCCGAAAGactt
accacattcttgacactcAAAAGGATTTATTCCCTCATAGACTGTTACTT
GATGCTTCACCAAATTTCTCTTTGTAGCAAAAGATTCACCACATTCCTGA
CACTCAATTGCCTTTATACCTTCGTGtagactttcattttcattgttttg
aaacttttgcaATTCATCATCAAATTTAATAGTGATTTCCTCTCCGATCT
GTGAATTAATTTCTTCAATCGATGAAAACTGATCAAAACAATTCATTCCA
TCGTTAATATTTACCGAATTTCTATTTTCCAAAATATCCATTAATTGTGC
ACTTTGATTCTTATTATCATCTTGAGACTTTGACTCGTCTTCAAGTTTAA
TGGtgatttcataatttttgggGTCAGTTTTTCTGGGTGATGTAACATCG
TTCCCCTTTtcatttctacaagaaattaTCGATAGTTCATTTTCACAGTT
TTTGAATGTTTCCAAACTTTTGTTGTCTGGATATCCGATTGATTCATCTT
CCAGTTTGATAACAATTTCCAAATGTTCATGATTCGTTTCGTCACAATCA
Tgaaattcttcttcttcaatttttatttttatttcttcaatctcattcat
ttcttaaaaaaaatactctaaa
Run BLAST on NCBI

transcript from alignment at sc0002143:22674..23743-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039581 ID=TCONS_00039581|Name=TCONS_00039581|organism=Clytia hemisphaerica|type=transcript|length=1070bp|location=Sequence derived from alignment at sc0002143:22674..23743- (Clytia hemisphaerica)
CTGCCAAACATTTACTACATTCTTGACATTTAAAGGCCTTAATACCTTGA
TGGACAGTTCTTTGGTGAGAAGTAAAGTTCGATTTCTTTCCGAAAGACTT
ACCACATTCTTGACACTCAAAAGGATTTATTCCCTCATAGACTGTTACTT
GATGCTTCACCAAATTTCTCTTTGTAGCAAAAGATTCACCACATTCCTGA
CACTCAAATGCCTTTATACCTTCATGGACAATTCTATGATGCCTCTTCAA
ATCATATTTCCGCCCAAAAAGCAGACCACATTCTTGACATTTAAAAGCCT
TAATACCTTGATGAACAGTTCTTCGGTGAGAAGTTAAGTTCGCTTTCTGT
CCAAAAGATTTACCACATTCGTGACATGTAAAGGCCTTTATACCTTGATG
GACAGTTCGTTGGTGCAAAGTTAAGTTCGATTTCTTTCCGAAAGACTTAC
CACATTCTTGACACTCAAAAAGATTTATTTCCTCATGGACTGTTACTTGA
TGCATCACCGAATTTCTCTTTGTAGGAAAAGATTCAACACATTCCTGACA
CTCAATTGCCTTTATACCTTCGTGTAGACTTTCATTTTCATTGTTTTGAA
ACTTTTGCAATTCATCATCAAATTTAATAGTGATTTCCTCTCCGATCTGT
GAATTAATTTCTTCAATCGATGAAAACTGATCAAAACAATTCATTCCATC
GTTAATATTTACCGAATTTCTATTTTCCAAAATATCCATTAATTGTGCAC
TTTGATTCTTATTATCATCTTGAGACTTTGACTCGTCTTCAAGTTTAATG
GTGATTTCATAATTTTTGGGGTCAGTTTTTCTGGGTGATGTAACATCGTT
CCCCTTTTCATTTCTACAAGAAATTATCGATAGTTCATTTTCACAGTTTT
TGAATGTTTCCAAACTTTTGTTGTCTGGATATCCGATTGATTCATCTTCC
AGTTTGATAACAATTTCCAAATGTTCATGATTCGTTTCGTCACAATCATG
AAATTCTTCTTCTTCAATTTTTATTTTTATTTCTTCAATCTCATTCATTT
CTTAAAAAAAATACTCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023901XLOC_023901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039581-exon-sc0002143-1575043694:23552..23743TCONS_00039581-exon-sc0002143-1575043694:23552..23743Clytia hemisphaericaexon
TCONS_00039581-exon-sc0002143-1575043694:22674..23203TCONS_00039581-exon-sc0002143-1575043694:22674..23203Clytia hemisphaericaexon
TCONS_00039581-exon-sc0002143-1510915933:23552..23743TCONS_00039581-exon-sc0002143-1510915933:23552..23743Clytia hemisphaericaexon
TCONS_00039581-exon-sc0002143-1510915933:22674..23203TCONS_00039581-exon-sc0002143-1510915933:22674..23203Clytia hemisphaericaexon
TCONS_00039581-exon-sc0002143-1491911889:23552..23743TCONS_00039581-exon-sc0002143-1491911889:23552..23743Clytia hemisphaericaexon
TCONS_00039581-exon-sc0002143-1491911889:22674..23203TCONS_00039581-exon-sc0002143-1491911889:22674..23203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002143supercontigsc0002143:22674..23743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06066	0.24885	0	0.972669	0.923378	1.03688	0.802582	1.10101	0.572822	1.76075	1.09187	0.537103	0.706118	1.39257	0	0.497585	1.19571	0.623629	0.351575	0	0.393	0.287336	1.16201	0.491279	0	0.684115	0.537189	0.256415	0.42477	0
Blast
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BLAST of TCONS_00039581 vs. Swiss-Prot (Human)
Match: ZN540 (Zinc finger protein 540 OS=Homo sapiens GN=ZNF540 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.985e-17
Identity = 34/84 (40.48%), Postives = 58/84 (69.05%), Query Frame = -2 
Query:    2 FQNNENESLHEGIKAIECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECSKCLA 253
            F   E++ +H G K  +C+ECG++F  + NL +H + ++ G+ P++C+ECGKSF ++  FT HQ+ +H G+K +KC+EC K  +
Sbjct:  508 FYLTEHQRIHTGEKPYKCKECGKAFIRRGNLKEH-LKIHSGLKPYDCKECGKSFSRRGQFTEHQK-IHTGVKPYKCKECGKAFS 589
The following BLAST results are available for this feature:
BLAST of TCONS_00039581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN5401.985e-1740.48Zinc finger protein 540 OS=Homo sapiens GN=ZNF540 ... [more]
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