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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039575 ID=TCONS_00039575|Name=TCONS_00039575|organism=Clytia hemisphaerica|type=transcript|length=147bp
CTTGGACACAATCTCAACTTCCCacatgATTCGGATCAATGCAAATGTTT
GACACCAAGAGGATGTTTCATGGGTGGATCAAAatCGAGCCGACCAGGTT
TCAGCAATTGTTCATTAAGTCGATTGGCTCAAAAAGAATTTGCTTGT Run BLAST on NCBI transcript from alignment at sc0002143:42512..44869+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039575 ID=TCONS_00039575|Name=TCONS_00039575|organism=Clytia hemisphaerica|type=transcript|length=2358bp|location=Sequence derived from alignment at sc0002143:42512..44869+ (Clytia hemisphaerica)
CTTGGACACAATCTCAACTTCCCacatggtaaaaaaaatttaataaataa
aaacagTAACACATCTTAAAAAATAGTAtatgggaccctgtcagatatac
TCAAAGCCTAAGAAAGAAAACCTGACCAGCGGTACGTCCCCGTAACAAAT
TTTGACTAAGTTgagtatttttaatttttaataaataaaacagtcaggaa
gaaaagacacttCTTGCCTGAACATTGTCACCAAAAGTgacatgaaactg
ccagtagcagaataaaaaagtgtcttgtCTTTTTGACTGACATCGCTCTA
CATATGTATCGAACACTGTAAAAAACTGAAGAAATACTAACAATAAGTAA
AACagaaagttttttccaaatacTTTACTATTGGGTACTGCGGCCGGAGC
CGCAGGCGACCCAAAGGCtcttctttcgatagctatctacccgaaggtaa
tGGAGGGCGCGCTACTCTTTcttcctggattgctccacttacccttgatc
cttctcttaattgctgagcatcaagcagacaGGCCtcgagtaccattttg
ggaatctttagtATGACCCGGCTGAGGGTTGAacccactgcactacggtc
gctcgAATACTTTACTATTGGGTGCTAATGGAGCTTGAAAAGTGGACCTT
GTCAGAtgtgaatgtttggtaaatctAGGACCCTATCAGACCTAAAACGA
AATATTTTCCCATTTTAACTCTGACGAAAGGCTACAATAATTAAAACAAA
CAACGACAAATTGAAACtcttttctaatttccaccctgaaaattgtacaa
aataaccaaaaaaacacatcttgaaaattagtaagtTTGGGACCCTGCCA
GATATATTCTCAGAGCCTAAGAAAGAGATGACCCTGACTAGCGACACGTT
ATACTAGGctaaaataagtttgaaatacCAAATTGCTAGACAATTCTatt
aatttttatttctcaAGCCAGTGTTCACGAGGACCTTTTTAAGCAATGTG
TTGGTATTTTTACCACGCTTTTTGTATTTGTTGTCTACGTCCCCGTAACA
AATTTCACTATAACACTATAACACCCCTTGACTATAATAACACTCCTCCT
GTTTAATTTCTTCCCACAGATTCGGATCAATGCAAATGTTTGACACCAAG
AGGATGTTTCATGGGTGGATCAAAGTAAGTCCAAATATTGGCATATCATT
AGATTACCTTACAGTTCAACAAGGATATGTAACTGAGTTTGACCTGCCTT
TAACCAAGTTCCTTGTTTTAACTAGCTCTTTTCACAGATTTTCCGTAGAG
ACATGTGTCCAGATTTGAAGACTAGTCTACGCCATGTTGTTTTACGATTT
ACCTTAAAGCCgctctccacttgcgcgcgcttcaatcgcactttttcgag
caatgcttccacgctattggtcaaaagaaaaatgaagcaattccattggc
gcgatctgacgtaacggttgaaaaaagttgaaatgtgttcaacttttttt
cgagTGCGCGCTACATGTTtattacgtaatcttttttcaggcaaaaagga
ttgaagccaaaaagtgcgattgcagcgtgcgcaagtggagaccggccttt
aggtTTCCGAACGTTcgtatttcaaaacattcgaatcgcacAGTCGATTA
CCAAACATTACTAGACTAGTCAGCTTTCAAACTGTTTTTAATTCCTTTGA
AACACCTCACAGCCAtggtgaaacttttttcctcagtggggatgaaaata
ccaattggggataaaaattctattgttccaaggttaaaaaatccagtggg
gatggttttggagtgcaatctttaaacatggaatttcgaatggggacgAA
ATCAAAGTCGATTTCCCAGTGGGCTGAAATTACAGGGTTTTTTCCCATAG
gcttataaagcccgaagggctagatgtcgggctttaagccatcgcagaaa
aaaaaaagtgaatatcggaaaaaacattgttgctattgttttcgaaaacc
cgttaagcttctgattggtcaatcgctgaaattctattgtaatgtcacat
gacttaggtaggatttcctacctaaccacggcacacttttcaacAAAAGC
tttacatctagccctttggactatataaatctatggttttttcccaccgg
ggacgaaattttttgCCAAACTTTCCAGGGGCTGAGGTCCcctgggtctg
tgacacagtggTGTTTTTGATGGCACCAGTGAGGGCGACCAATAACGGCC
CGATTCGCAACCGATCACTTTCcctattttttaaacatttttagatCGAG
CCGACCAGGTTTCAGCAATTGTTCATTAAGTCGATTGGCTCAAAAAGAAT
TTGCTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039575-exon-sc0002143-1491911889:42512..42539 | TCONS_00039575-exon-sc0002143-1491911889:42512..42539 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1510915933:42512..42539 | TCONS_00039575-exon-sc0002143-1510915933:42512..42539 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1575043694:42512..42539 | TCONS_00039575-exon-sc0002143-1575043694:42512..42539 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1491911889:43631..43685 | TCONS_00039575-exon-sc0002143-1491911889:43631..43685 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1510915933:43631..43685 | TCONS_00039575-exon-sc0002143-1510915933:43631..43685 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1575043694:43631..43685 | TCONS_00039575-exon-sc0002143-1575043694:43631..43685 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1491911889:44806..44869 | TCONS_00039575-exon-sc0002143-1491911889:44806..44869 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1510915933:44806..44869 | TCONS_00039575-exon-sc0002143-1510915933:44806..44869 | Clytia hemisphaerica | exon |
| TCONS_00039575-exon-sc0002143-1575043694:44806..44869 | TCONS_00039575-exon-sc0002143-1575043694:44806..44869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002143 | supercontig | sc0002143:42512..44869 + |
Blast
The following BLAST results are available for this feature:
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