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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039563 ID=TCONS_00039563|Name=TCONS_00039563|organism=Clytia hemisphaerica|type=transcript|length=1759bpRun BLAST on NCBI transcript from alignment at sc0002143:3703..24440+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039563 ID=TCONS_00039563|Name=TCONS_00039563|organism=Clytia hemisphaerica|type=transcript|length=20738bp|location=Sequence derived from alignment at sc0002143:3703..24440+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039563 vs. Swiss-Prot (Human)
Match: ZN287 (Zinc finger protein 287 OS=Homo sapiens GN=ZNF287 PE=2 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 3.487e-63 Identity = 104/288 (36.11%), Postives = 156/288 (54.17%), Query Frame = 3
Query: 294 DDNKNQSAQLMDILENRNSVNINDGMNCFDQFSSIEEINSQIGEEITIKFDDELQKFQNN----ENESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECSKCLAEKRNLTSHQRTVHESVQAFKCQECGKMF 1145
+ + N Q L+N+ SV N+G F+ S + E K + +KF+ +++S H K+ EC+EC + F + + HQ +H +EC +CGK+F ++++LT+HQR +H G K + C +CGK F Q+A+LT H+RT H G K +KC ECG F L H R VH G K + C ECG++F+ +L++HQ ++ G P++C EC K F + + HQR +H G K +KC EC K A L HQ T H +++ C CGK F
Sbjct: 315 EKHSNLIVQFDTQLDNKTSV-YNEGRATFNHVSYGIVHRKILPGEKPYKCNVCGKKFRKYPSLLKHQSTHAKEKSYECEECGKEFRHISSLIAHQ-RMHTGEKPYECHQCGKAFSQRAHLTIHQR-IHTGEKPYKCDDCGKDFSQRAHLTIHQRT-HTGEKPYKCLECGKTFSHSSSLINHQR-VHTGEKPYICNECGKTFSQSTHLLQHQ-KIHTGKKPYKCNECWKVFSQSTYLIRHQR-IHSGEKCYKCNECGKAFAHSSTLIQHQ-TTHTGEKSYICNICGKAF 594 HSP 2 Score: 98.2117 bits (243), Expect = 3.487e-63 Identity = 68/171 (39.77%), Postives = 90/171 (52.63%), Query Frame = 1
Query: 1138 KCFSTESNLKKHQKTVHQGVKAFNCQE*SKCFAEKKNLSCHRRTVHEGVL*SLFNV-----KNMVKLLDARRP*LLRTVHEGVKAFKCQECDKFFTSKSYLKVHQKTVHQGVKAFKCQECSKCFGQNTDLSSHQRTVHQVMKPFLCQECGKSFGQKTNLTSHQRTVHEGVK 1635
K FS +NL +H +T H G K + C K F++ +L+ H+R +H G N+ + L +R +H G K +KC EC K F S L HQ+T H G + +KC EC K F Q T L HQR +H KP+ C+ CGK+F Q TNL HQR VH G K
Sbjct: 592 KAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFSQSVHLTQHQR-IHNGEKPFKCNICGKAYRQGANLTQHQR------IHTGEKPYKCNECGKAFIYSSSLNQHQRT-HTGERPYKCNECDKDFSQRTCLIQHQR-IHTGEKPYACRICGKTFTQSTNLIQHQR-VHTGAK 751 HSP 3 Score: 164.081 bits (414), Expect = 6.788e-43 Identity = 94/252 (37.30%), Postives = 134/252 (53.17%), Query Frame = 3
Query: 477 NESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVT---------------------------VYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECSKCLAEKRNLTSHQRTVHESVQAFKCQECGKMFFY 1151
++ +H G K +C +C + F + + +HQ T H ++C ECGK+F S+L HQR VH G K + C+ECGK+F Q +L H++ +H G K +KC EC +F + L RH RI H G K ++C ECG++FA L++HQ T + G P++C CGK+F + + T HQR +H G K FKC C K + NLT HQR +H + +KC ECGK F Y
Sbjct: 435 HQRIHTGEKPYKCDDCGKDFSQRAHLTIHQRT-HTGEKPYKCLECGKTFSHSSSLINHQR-VHTGEKPYICNECGKTFSQSTHLLQHQK-IHTGKKPYKCNECWKVFSQSTYLIRHQRI-HSGEKCYKCNECGKAFAHSSTLIQHQTTHTGEKSYICNICGKAFSQSANLTQHHRTHTGEKPYKCSVCGKAFSQSVHLTQHQR-IHNGEKPFKCNICGKAYRQGANLTQHQR-IHTGEKPYKCNECGKAFIY 680 HSP 4 Score: 161.77 bits (408), Expect = 3.926e-42 Identity = 90/224 (40.18%), Postives = 128/224 (57.14%), Query Frame = 3
Query: 474 ENESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECSKCLAEKRNLTSHQRTVHESVQAFKCQECGKMF 1145
+++ +H G K +C EC + F + HQ +H ++C ECGK+F S L HQ T H G K++ C+ CGK+F Q ANLT H RT H G K +KC CG F + L +H RI H G K F+C CG+++ NL +HQ ++ G P++C ECGK+F S+ HQRT H G + +KC EC K +++ L HQR +H + + C+ CGK F
Sbjct: 518 QHQKIHTGKKPYKCNECWKVFSQSTYLIRHQ-RIHSGEKCYKCNECGKAFAHSSTLIQHQ-TTHTGEKSYICNICGKAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFSQSVHLTQHQRI-HNGEKPFKCNICGKAYRQGANLTQHQ-RIHTGEKPYKCNECGKAFIYSSSLNQHQRT-HTGERPYKCNECDKDFSQRTCLIQHQR-IHTGEKPYACRICGKTF 734 HSP 5 Score: 142.51 bits (358), Expect = 1.428e-35 Identity = 80/206 (38.83%), Postives = 116/206 (56.31%), Query Frame = 3
Query: 477 NESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIKAFKCQECSKCLAEKRNLTSHQRT 1094
++ +H G K +C EC ++F + HQ T H + C CGK+F + +NLT H RT H G K + C CGK+F Q +LT H+R +H G K FKC CG + + +L +H RI H G K ++C ECG++F +L +HQ T + G P++C EC K F +++ HQR +H G K + C+ C K + NL HQR
Sbjct: 547 HQRIHSGEKCYKCNECGKAFAHSSTLIQHQTT-HTGEKSYICNICGKAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFSQSVHLTQHQR-IHNGEKPFKCNICGKAYRQGANLTQHQRI-HTGEKPYKCNECGKAFIYSSSLNQHQRT-HTGERPYKCNECDKDFSQRTCLIQHQR-IHTGEKPYACRICGKTFTQSTNLIQHQRV 746 HSP 6 Score: 124.79 bits (312), Expect = 7.799e-30 Identity = 71/184 (38.59%), Postives = 106/184 (57.61%), Query Frame = 3
Query: 474 ENESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQVTVYEGINPFECQECGKSFGKKSNFTSHQRTVHQGIK 1025
++++ H G K+ C C ++F N H T H ++C CGK+F + +LT HQR +H G K F C+ CGK++ Q ANLT H+R +H G K +KC ECG F L +H R H G + ++C EC + F+ + L++HQ ++ G P+ C+ CGK+F + +N HQR VH G K
Sbjct: 574 QHQTTHTGEKSYICNICGKAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFSQSVHLTQHQR-IHNGEKPFKCNICGKAYRQGANLTQHQR-IHTGEKPYKCNECGKAFIYSSSLNQHQR-THTGERPYKCNECDKDFSQRTCLIQHQ-RIHTGEKPYACRICGKTFTQSTNLIQHQR-VHTGAK 751 HSP 7 Score: 109.383 bits (272), Expect = 9.025e-25 Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 1
Query: 1156 SNLKKHQKTVHQGVKAFNCQE*SKCFAEKKNLSCHRRTVHEGVL*SLFNVKNMVKLLDARRP*LLRTVHEGVKAFKCQECDKFFTSKSYLKVHQKTVHQGVKAFKCQECSKCFGQNTDLSSHQRTVHQVMKPFLCQECGKSFGQKTNLTSHQRTVHEGVKAFKYQECG*CFSTKSYLEKH 1695
S+L HQ+ +H G K + C + K F+++ +L+ H+R +H G K +KC +C K F+ +++L +HQ+T H G K +KC EC K F ++ L +HQR VH KP++C ECGK+F Q T+L HQ+ +H G K +K EC FS +YL +H
Sbjct: 402 SSLIAHQR-MHTGEKPYECHQCGKAFSQRAHLTIHQR------------------------------IHTGEKPYKCDDCGKDFSQRAHLTIHQRT-HTGEKPYKCLECGKTFSHSSSLINHQR-VHTGEKPYICNECGKTFSQSTHLLQHQK-IHTGKKPYKCNECWKVFSQSTYLIRH 547 HSP 8 Score: 103.99 bits (258), Expect = 4.410e-23 Identity = 78/216 (36.11%), Postives = 106/216 (49.07%), Query Frame = 1
Query: 1111 RPSNVKNVVKCFSTESNLKKHQKTVHQGVKAFNCQE*SKCFAEKKNLSCHRRTVHEGVL*SLFN-----VKNMVKLLDARRP*LLRTVHEGVKAFKCQECDKFFTSKSYLKVHQKTVHQGVKAFKCQECSKCFGQNTDLSSHQRTVHQVMKPFLCQECGKSFGQKTNLTSHQRTVHEGVKAFKYQECG*CFSTKSYLEKHSP**SLLSVRNVEKIF 1743
+P + K FS ++L HQ+T H G K + C E K F+ +L H+R VH G + N LL ++ +H G K +KC EC K F+ +YL HQ+ +H G K +KC EC K F ++ L HQ T H K ++C CGK+F Q NLT H RT H G K +K CG FS +L +H + N EK F
Sbjct: 443 KPYKCDDCGKDFSQRAHLTIHQRT-HTGEKPYKCLECGKTFSHSSSLINHQR-VHTGEKPYICNECGKTFSQSTHLLQHQK------IHTGKKPYKCNECWKVFSQSTYLIRHQR-IHSGEKCYKCNECGKAFAHSSTLIQHQ-TTHTGEKSYICNICGKAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFSQSVHLTQHQ------RIHNGEKPF 641 HSP 9 Score: 98.5969 bits (244), Expect = 2.126e-21 Identity = 72/188 (38.30%), Postives = 98/188 (52.13%), Query Frame = 1
Query: 1138 KCFSTESNLKKHQKTVHQGVKAFNCQE*SKCFAEKKNLSCHRRTVHEGVL*SLFNVKNMVKLLDARRP*LLR--TVHEGVKAFKCQECDKFFTSKSYLKVHQKTVHQGVKAFKCQECSKCFGQNTDLSSHQRTVHQVMKPFLCQECGKSFGQKTNLTSHQRTVHEGVKAFKYQECG*CFSTKSYLEKH 1695
K FS ++L +HQK +H G K + C E K F++ L H+R +H G + K A L++ T H G K++ C C K F+ + L H +T H G K +KC C K F Q+ L+ HQR +H KPF C CGK++ Q NLT HQR +H G K +K ECG F S L +H
Sbjct: 508 KTFSQSTHLLQHQK-IHTGKKPYKCNECWKVFSQSTYLIRHQR-IHSGE--KCYKCNECGKAF-AHSSTLIQHQTTHTGEKSYICNICGKAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFSQSVHLTQHQR-IHNGEKPFKCNICGKAYRQGANLTQHQR-IHTGEKPYKCNECGKAFIYSSSLNQH 687 HSP 10 Score: 97.4413 bits (241), Expect = 4.550e-21 Identity = 71/195 (36.41%), Postives = 98/195 (50.26%), Query Frame = 1
Query: 1111 RPSNVKNVVKCFSTESNLKKHQKTVHQGVKAFNCQE*SKCFAEKKNLSCHRRTVHEGVL*SLFNVKNMVKLLDARRP*LLRTVHEGVKAFKCQECDKFFTSKSYLKVHQKTVHQGVKAFKCQECSKCFGQNTDLSSHQRTVHQVMKPFLCQECGKSFGQKTNLTSHQRTVHEGVKAFKYQECG*CFSTKSYLEKH 1695
+P K FS + L +HQ+ +H G K + C E K FA L H+ T H G + N+ A RT H G K +KC C K F+ +L HQ+ +H G K FKC C K + Q +L+ HQR +H KP+ C ECGK+F ++L HQRT H G + +K EC FS ++ L +H
Sbjct: 527 KPYKCNECWKVFSQSTYLIRHQR-IHSGEKCYKCNECGKAFAHSSTLIQHQ-TTHTGEKSYICNICGKAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFSQSVHLTQHQR-IHNGEKPFKCNICGKAYRQGANLTQHQR-IHTGEKPYKCNECGKAFIYSSSLNQHQRT-HTGERPYKCNECDKDFSQRTCLIQH 715 HSP 11 Score: 94.3597 bits (233), Expect = 4.687e-20 Identity = 71/193 (36.79%), Postives = 98/193 (50.78%), Query Frame = 1
Query: 1138 KCFSTESNLKKHQKTVHQGVKAFNCQE*SKCFAEKKNLSCHRRTVHEG-------VL*SLFNVKNMVKLLDARRP*LLRTVHEGVKAFKCQECDKFFTSKSYLKVHQKTVHQGVKAFKCQECSKCFGQNTDLSSHQRTVHQVMKPFLCQECGKSFGQKTNLTSHQRTVHEGVKAFKYQECG*CFSTKSYLEKH 1695
K F+ S L +HQ T H G K++ C K F++ NL+ H RT H G V F+ V L +R +H G K FKC C K + + L HQ+ +H G K +KC EC K F ++ L+ HQRT H +P+ C EC K F Q+T L HQR +H G K + + CG F+ + L +H
Sbjct: 564 KAFAHSSTLIQHQ-TTHTGEKSYICNICGKAFSQSANLTQHHRT-HTGEKPYKCSVCGKAFS--QSVHLTQHQR------IHNGEKPFKCNICGKAYRQGANLTQHQR-IHTGEKPYKCNECGKAFIYSSSLNQHQRT-HTGERPYKCNECDKDFSQRTCLIQHQR-IHTGEKPYACRICGKTFTQSTNLIQH 743 HSP 12 Score: 80.4925 bits (197), Expect = 9.482e-16 Identity = 50/153 (32.68%), Postives = 77/153 (50.33%), Query Frame = 3
Query: 456 QKFQNNENESLHEGIKAIECQECVESFPTKRNSVMHQVTVHEEINLFECQECGKSFGKKSNLTLHQRTVHQGIKAFTCHECGKSFGQKANLTSHRRTVHQGIKAFKCQECGLLFGRKYDLKRHHRIVHEGIKAFECQECGESFATKRNLVKHQ 914
Q +++ +H G K F+C CGK++ + +NLT HQR +H G K + C+ECGK+F ++L H+RT H G + +KC EC F ++ L +H RI H G K + C+ CG++F NL++HQ
Sbjct: 624 QSVHLTQHQRIHNGEKP-----------------------------FKCNICGKAYRQGANLTQHQR-IHTGEKPYKCNECGKAFIYSSSLNQHQRT-HTGERPYKCNECDKDFSQRTCLIQHQRI-HTGEKPYACRICGKTFTQSTNLIQHQ 744 The following BLAST results are available for this feature:
BLAST of TCONS_00039563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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