|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039562 ID=TCONS_00039562|Name=TCONS_00039562|organism=Clytia hemisphaerica|type=transcript|length=1345bpRun BLAST on NCBI transcript from alignment at sc0002143:3678..10518+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039562 ID=TCONS_00039562|Name=TCONS_00039562|organism=Clytia hemisphaerica|type=transcript|length=6841bp|location=Sequence derived from alignment at sc0002143:3678..10518+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039562 vs. Swiss-Prot (Human)
Match: ZN519 (Zinc finger protein 519 OS=Homo sapiens GN=ZNF519 PE=2 SV=2) HSP 1 Score: 200.29 bits (508), Expect = 2.227e-57 Identity = 110/206 (53.40%), Postives = 148/206 (71.84%), Query Frame = 3
Query: 648 HKGIHKGYK-YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT 1262
H+ IH G K Y+CK+CDK +N K++ + H+ +H G +PFKC EC KAF+R +YLT H+R +H G +AF+C+ECGK+F R S LT H+R +H G KPF C+ECGK+F + +T HQR +H G KPF C+ECGK+F + LT HQR +H G K FKC+ECGK+F ++LT HQR +H G K+FKC+ECGK F S+L +HQR
Sbjct: 282 HQKIHTGEKPYKCKKCDKAFN-KSSHLAQHQRIHTGEKPFKCKECGKAFNRGSYLTQHQR-IHTGERAFKCEECGKAFNRGSYLTQHQR-IHTGEKPFRCKECGKAFNRSSYVTQHQR-MHTGEKPFKCKECGKAFNRASHLTQHQR-IHTGEKHFKCKECGKAFNRGSHLTRHQR-IHTGEKSFKCEECGKAFIWGSHLTQHQRV 481 HSP 2 Score: 195.667 bits (496), Expect = 1.165e-55 Identity = 114/229 (49.78%), Postives = 157/229 (68.56%), Query Frame = 3
Query: 636 HSTRHKGIHKGYK-YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKPFERQKYGKRIERK 1316
H +H+ IH G K ++CK+C K +N + +++ H+ +H G R FKC+EC KAF+R +YLT H+R +H G K F C+ECGK+F R S +T H+R +H G KPF C+ECGK+F + LT HQR +H G K F C+ECGK+F + LT HQR +H G K+FKC ECGK+F ++LT HQR VH G K FKC+ECGK F+ S+L +HQR +KPF+ ++ GK R+
Sbjct: 306 HLAQHQRIHTGEKPFKCKECGKAFN-RGSYLTQHQRIHTGERAFKCEECGKAFNRGSYLTQHQR-IHTGEKPFRCKECGKAFNRSSYVTQHQR-MHTGEKPFKCKECGKAFNRASHLTQHQR-IHTGEKHFKCKECGKAFNRGSHLTRHQR-IHTGEKSFKCEECGKAFIWGSHLTQHQR-VHTGEKFFKCKECGKAFTRSSHLTQHQRIHTGEKPFKCKECGKAFNRR 528 HSP 3 Score: 184.496 bits (467), Expect = 1.484e-51 Identity = 103/206 (50.00%), Postives = 145/206 (70.39%), Query Frame = 3
Query: 642 TRHKGIHKGYK-YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQ 1256
T+H+ IH G + ++C++C K +N + +++ H+ +H G +PF+C EC KAF+R +Y+T H+R +H G K F+C+ECGK+F R S LT H+R +H G K F C+ECGK+F + LT HQR +H G K F C+ECGK+F + LT HQR VH G K FKC+ECGK+F ++LT HQR +H G K FKC+ECGK F+ +S L +HQ
Sbjct: 336 TQHQRIHTGERAFKCEECGKAFN-RGSYLTQHQRIHTGEKPFRCKECGKAFNRSSYVTQHQR-MHTGEKPFKCKECGKAFNRASHLTQHQR-IHTGEKHFKCKECGKAFNRGSHLTRHQR-IHTGEKSFKCEECGKAFIWGSHLTQHQR-VHTGEKFFKCKECGKAFTRSSHLTQHQR-IHTGEKPFKCKECGKAFNRRSTLTQHQ 535 HSP 4 Score: 132.88 bits (333), Expect = 9.099e-34 Identity = 87/241 (36.10%), Postives = 131/241 (54.36%), Query Frame = 3
Query: 675 YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRT---------------------------VHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKPFERQKYGKRIER 1313
Y C +C+K + + I +++H +P+ +EC + + LT H+R ++ G K+ + +E GK+F R L L + +H G KP+ C++C K+F + L HQR +H G KPF C+ECGK+F + LT HQR +H G +AFKC ECGK+F + LT HQR +H G K F+C+ECGK F+ SY+ +HQR +KPF+ ++ GK R
Sbjct: 181 YNCNECEKVFYQSSKLI-FPENIHIQKKPYNSNECGETSDPFSKLTQHQRIYIGESSQRCNKKCIIVFSQSHLKGHKIINTGEKSVKYKERGKAFTR--GLHLGHQKIHTGEKPYKCKKCDKAFNKSSHLAQHQR-IHTGEKPFKCKECGKAFNRGSYLTQHQR-IHTGERAFKCEECGKAFNRGSYLTQHQR-IHTGEKPFRCKECGKAFNRSSYVTQHQRMHTGEKPFKCKECGKAFNR 415 HSP 5 Score: 109.768 bits (273), Expect = 9.393e-26 Identity = 80/228 (35.09%), Postives = 114/228 (50.00%), Query Frame = 3
Query: 714 NAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKR---------------------------TVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKPFERQKYGKRIER 1313
++ I H H + C+EC K F + + L I +H K + ECG++ S LT H+R ++ G K +E GK+F R HQ+ +H G KP+ C++C K+F + L HQR +H G K FKC+ECGK+F + LT HQR +H G +AFKC+ECGK F+ SYL +HQR +KPF ++ GK R
Sbjct: 165 DSNISKHHSTHFLENYYNCNECEKVFYQSSKL-IFPENIHIQKKPYNSNECGETSDPFSKLTQHQRIYIGESSQRCNKKCIIVFSQSHLKGHKIINTGEKSVKYKERGKAF-TRGLHLGHQK-IHTGEKPYKCKKCDKAFNKSSHLAQHQR-IHTGEKPFKCKECGKAFNRGSYLTQHQR-IHTGERAFKCEECGKAFNRGSYLTQHQRIHTGEKPFRCKECGKAFNR 387 The following BLAST results are available for this feature:
BLAST of TCONS_00039562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.