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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039561 ID=TCONS_00039561|Name=TCONS_00039561|organism=Clytia hemisphaerica|type=transcript|length=1494bpRun BLAST on NCBI transcript from alignment at sc0002143:3678..5171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039561 ID=TCONS_00039561|Name=TCONS_00039561|organism=Clytia hemisphaerica|type=transcript|length=1494bp|location=Sequence derived from alignment at sc0002143:3678..5171+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039561 vs. Swiss-Prot (Human)
Match: ZN519 (Zinc finger protein 519 OS=Homo sapiens GN=ZNF519 PE=2 SV=2) HSP 1 Score: 204.142 bits (518), Expect = 2.749e-58 Identity = 118/234 (50.43%), Postives = 159/234 (67.95%), Query Frame = 3
Query: 648 HKGIHKGYK-YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 1343
H+ IH G K Y+CK+CDK +N K++ + H+ +H G +PFKC EC KAF+R +YLT H+R +H G +AF+C+ECGK+F R S LT H+R +H G KPF C+ECGK+F + +T HQR +H G KPF C+ECGK+F + LT HQR +H G K FKC+ECGK+F ++LT HQR +H G K+FKC+ECGK F S+L +HQR +K F E K L +H+RI
Sbjct: 282 HQKIHTGEKPYKCKKCDKAFN-KSSHLAQHQRIHTGEKPFKCKECGKAFNRGSYLTQHQR-IHTGERAFKCEECGKAFNRGSYLTQHQR-IHTGEKPFRCKECGKAFNRSSYVTQHQR-MHTGEKPFKCKECGKAFNRASHLTQHQR-IHTGEKHFKCKECGKAFNRGSHLTRHQR-IHTGEKSFKCEECGKAFIWGSHLTQHQRVHTGEKFFKCKECGKAFTRSSHLTQHQRI 509 HSP 2 Score: 185.267 bits (469), Expect = 1.973e-51 Identity = 103/206 (50.00%), Postives = 145/206 (70.39%), Query Frame = 3
Query: 642 TRHKGIHKGYK-YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQ 1256
T+H+ IH G + ++C++C K +N + +++ H+ +H G +PF+C EC KAF+R +Y+T H+R +H G K F+C+ECGK+F R S LT H+R +H G K F C+ECGK+F + LT HQR +H G K F C+ECGK+F + LT HQR VH G K FKC+ECGK+F ++LT HQR +H G K FKC+ECGK F+ +S L +HQ
Sbjct: 336 TQHQRIHTGERAFKCEECGKAFN-RGSYLTQHQRIHTGEKPFRCKECGKAFNRSSYVTQHQR-MHTGEKPFKCKECGKAFNRASHLTQHQR-IHTGEKHFKCKECGKAFNRGSHLTRHQR-IHTGEKSFKCEECGKAFIWGSHLTQHQR-VHTGEKFFKCKECGKAFTRSSHLTQHQR-IHTGEKPFKCKECGKAFNRRSTLTQHQ 535 HSP 3 Score: 132.494 bits (332), Expect = 2.357e-33 Identity = 89/251 (35.46%), Postives = 132/251 (52.59%), Query Frame = 3
Query: 675 YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRT---------------------------VHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGIKPFNCQECGKSFGLRTTLTSHQRTVHEGVKAFKCRECGKSFGHKTNLTSHQRTVHEGVKAFKCQECGKCFSTKSYLKRHQRT-VHDKAF*ASEIWKKNLEKGSLKKHERI 1343
Y C +C+K + + I +++H +P+ +EC + + LT H+R ++ G K+ + +E GK+F R L L + +H G KP+ C++C K+F + L HQR +H G KPF C+ECGK+F + LT HQR +H G +AFKC ECGK+F + LT HQR +H G K F+C+ECGK F+ SY+ +HQR +K F E K L +H+RI
Sbjct: 181 YNCNECEKVFYQSSKLI-FPENIHIQKKPYNSNECGETSDPFSKLTQHQRIYIGESSQRCNKKCIIVFSQSHLKGHKIINTGEKSVKYKERGKAFTR--GLHLGHQKIHTGEKPYKCKKCDKAFNKSSHLAQHQR-IHTGEKPFKCKECGKAFNRGSYLTQHQR-IHTGERAFKCEECGKAFNRGSYLTQHQR-IHTGEKPFRCKECGKAFNRSSYVTQHQRMHTGEKPFKCKECGKAFNRASHLTQHQRI 425 HSP 4 Score: 108.997 bits (271), Expect = 5.509e-26 Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 3
Query: 636 HSTRHKGIHKGYK-YRCKQCDKGYNAKNAFIQHHKDVHEGLRPFKCDECHKAFSRKNYLTIHKRTVHEGIKAFECQECGKSFGRKSALTLHKRTVHEGIKPFNCQECGKSFGLRTTLTSHQ 995
H T+H+ IH G K ++CK+C K +N + + + H+ +H G + FKC+EC KAF ++LT H+R VH G K F+C+ECGK+F R S LT H+R +H G KPF C+ECGK+F R+TLT HQ
Sbjct: 418 HLTQHQRIHTGEKHFKCKECGKAFN-RGSHLTRHQRIHTGEKSFKCEECGKAFIWGSHLTQHQR-VHTGEKFFKCKECGKAFTRSSHLTQHQR-IHTGEKPFKCKECGKAFNRRSTLTQHQ 535 HSP 5 Score: 27.7202 bits (60), Expect = 5.509e-26 Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 1
Query: 589 KPFKCNECGERFYQESTL 642
KPFKC ECG+ F + S L
Sbjct: 402 KPFKCKECGKAFNRASHL 419 The following BLAST results are available for this feature:
BLAST of TCONS_00039561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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