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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039558 ID=TCONS_00039558|Name=TCONS_00039558|organism=Clytia hemisphaerica|type=transcript|length=1073bpRun BLAST on NCBI transcript from alignment at sc0002143:1654..20524+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039558 ID=TCONS_00039558|Name=TCONS_00039558|organism=Clytia hemisphaerica|type=transcript|length=18871bp|location=Sequence derived from alignment at sc0002143:1654..20524+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039558 vs. Swiss-Prot (Human)
Match: ZN33A (Zinc finger protein 33A OS=Homo sapiens GN=ZNF33A PE=1 SV=3) HSP 1 Score: 208.764 bits (530), Expect = 3.342e-60 Identity = 137/299 (45.82%), Postives = 172/299 (57.53%), Query Frame = 3
Query: 108 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKMSRMW*KIFRKRN*TFHQRFAHQGIRAFKCS*FCNCFVEKRNLTFHQIIVHEVVKASNCQDGGKSF 998
C K+F K NLT HQR+ H G K F+C ECGK+F HKSALTLHQRT H G K ++C CG F + DL +H + H G+K +EC ECGKSFR +L HQRT H G PF+C ECG SF KS LT HQR +H G K++EC CG F L R H+IIH G K +EC ECGK+F K++LT HQR T K C +CGK F K+T++ H H G K ++ + K T H R H G + ++C+ F +K LT HQ I H K C + GK+F
Sbjct: 361 CEKAFWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQR-THTGLKPYECYECGKSFRVTSHLKVHQRT-HTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTR-HQIIHTGWKPYECYECGKTFCLKSDLTVHQRTHTGQKPFACPECGKFFSHKSTLSQHYR------THTGEKPYECHECGKIFYNKSYLTKHNR-THTGEKPYECNECGKAFYQKSQLTQHQRI-HIGEKPYKCNECGKAF 645 HSP 2 Score: 181.8 bits (460), Expect = 1.091e-50 Identity = 134/323 (41.49%), Postives = 168/323 (52.01%), Query Frame = 3
Query: 90 SLKKGLCGKSFG--QKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQRTVH---KGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKMSRMW*KIFRKRN*TFHQRFAHQGIRAFKCS*FCNCFVEKRNLTFHQIIVHEVVKASNCQDGGKSFGCNIYTSHQRIVHQG 1043
S+K CG+S ++K SH + +G K F+C ECGK+F KS LT HQR VH G K F+C EC F +L +H + H G K FEC ECGK+F K L HQRT H G P++C CG +F +KS LT HQRT H G+K +EC ECG F LK H R H G K FEC ECGKSF +K+NLT HQR +H K C CGK+F K+ +T H+ +H G K ++ K + T HQR H G + F C F K L+ H H K C + GK F Y + H G
Sbjct: 296 SMKHYDCGESGNNFRRKLCLSHLQKGDKGEKHFECNECGKAFWEKSHLTRHQR-VHTGQKPFQCNECEKAFWDKSNLTKHQR-SHTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQR-THTGEKPFECLECGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRHQ------IIHTGWKPYECYECGKTFCLKSDLTVHQR-THTGQKPFACPECGKFFSHKSTLSQH-YRTHTGEKPYECHECGKIFYNKSYLTKHNRTHTG 604 HSP 3 Score: 178.718 bits (452), Expect = 1.115e-49 Identity = 125/302 (41.39%), Postives = 158/302 (52.32%), Query Frame = 3
Query: 108 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHK----------------------NLTWQSTVHRGIKCFKMSRMW*KIFRKRN*TFHQRFAHQGIRAFKCS*FCNCFVEKRNLTFHQ 941
CGKSF +K NLT HQR +H G K+++C CGK+F HKS LT HQ +H G K +EC ECG F DL H + H G K F C ECGK F K L+ H RT H G P++C ECG F KS LT H RT H G K +EC ECG F + L +H RI H G K ++C ECGK+F K+ L HQR T K C +CGKSF K+ + H+ +LT H G K + + +RK HQR +H G + ++C+ F +K NL HQ
Sbjct: 473 CGKSFSEKSNLTQHQR-IHIGDKSYECNACGKTFYHKSLLTRHQ-IIHTGWKPYECYECGKTFCLKSDLTVHQR-THTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKAFYQKSQLTQHQRI-HIGEKPYKCNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLIFHERKHTGEKPYECNECGKFFRHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSELAQHQR-SHTGEKPYECNTCRKTFSQKSNLIVHQ 767 HSP 4 Score: 151.369 bits (381), Expect = 5.635e-40 Identity = 100/244 (40.98%), Postives = 118/244 (48.36%), Query Frame = 3
Query: 108 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRT---------------------------VHEGIKAFECQECGLLFGRNYDLKRHHRI---------------------------IHEGIKAFECQECGKSFGQKTNLTSHQR 677
CGK+F K +LT HQRT H G K F C ECGK F HKS L+ H RT H G K +EC ECG +F L +H++ H G K +EC ECGK+F QK L HQR +H G P+KC ECG +F KSAL +HQRT H G K +EC ECG F L HHR H G K +EC C K+F QK+NL HQR
Sbjct: 529 CGKTFCLKSDLTVHQRT-HTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNR-THTGEKPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRTHTQEKPYKCNECGKSFCVKSGLIFHERKHTGEKPYECNECGKFFRHKSSLTVHHRAHTGEKSCQCNECGKIFYRKSELAQHQRSHTGEKPYECNTCRKTFSQKSNLIVHQR 768 HSP 5 Score: 95.5153 bits (236), Expect = 2.593e-21 Identity = 91/282 (32.27%), Postives = 122/282 (43.26%), Query Frame = 3
Query: 273 CQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHG-GIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHK----------------------NLTWQSTVHRGIKCFKMSRMW*KIFRKRN*TFHQRFAHQGIRAFKCS*FCNCFVEKRNLTFHQIIVHEVVKASNCQDGGKSFGCNIYTSHQRIVHQG 1043
C LLF H+I +E +C K K L+ HG + + C E GN+F RK L+ H + +G K FEC ECG F L RH R+ H G K F+C EC K+F K+NLT HQR T K C +CGK+F K+ +T H+ +LT H G+K ++ + HQR H G + F+C F EK NLT HQ I H K+ C GK+F + +I+H G
Sbjct: 256 CDSSSLLF---------HQISPSRDNHYEFSDCEKFLCVKSTLSK----PHGVSMKHYDCGESGNNFRRKLCLS-HLQKGDKGEKHFECNECGKAFWEKSHLTRHQRV-HTGQKPFQCNECEKAFWDKSNLTKHQRSHTGEKPFECNECGKAFSHKSALTLHQRTHTGEKPYQCNACGKTFCQKSDLTKHQRTHTGLKPYECYECGKSFRVTSHLKVHQR-THTGEKPFECLECGKSFSEKSNLTQHQRI-HIGDKSYECNACGKTFYHKSLLTRHQIIHTG 520 The following BLAST results are available for this feature:
BLAST of TCONS_00039558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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