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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039557 ID=TCONS_00039557|Name=TCONS_00039557|organism=Clytia hemisphaerica|type=transcript|length=1888bpRun BLAST on NCBI transcript from alignment at sc0002143:1623..3510+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039557 ID=TCONS_00039557|Name=TCONS_00039557|organism=Clytia hemisphaerica|type=transcript|length=1888bp|location=Sequence derived from alignment at sc0002143:1623..3510+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00039557 vs. Swiss-Prot (Human)
Match: ZNF98 (Zinc finger protein 98 OS=Homo sapiens GN=ZNF98 PE=2 SV=4) HSP 1 Score: 214.542 bits (545), Expect = 1.099e-60 Identity = 143/399 (35.84%), Postives = 214/399 (53.63%), Query Frame = 1
Query: 52 YSNYAWLYHCFYDWTTQLFNRT--SSLKKGLCGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQRTVHKG---LNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKMSRMW*KIFRKRN*TFHQRFAHQGIRAFKCS*FCNCFVEKRNLTFHQIIVHEVVKASNCQDGGKSFGCNIYTSHQRIVHQGINQGI*FSLMW*IFWG*KYFFKAQENVHNRIKLFKCQECGKSFARESHLKAHQ 1233
Y Y ++H F + T S K C KSF +L H+R +H G K +KC+ECGK++ S L+ H+R +H G K ++C+ECG F R L H KI+H G K ++C+ECGK+F Q NL +H+R +H G P+KC+ECG +F + S LT H + +H G K ++C+ECG F ++ L H +IIH G K ++C+ECGK+F + ++LT+H+R +H G C +CGK+F+Q +T+T+HK +H G K +K R + T H+R H G + +KC F LT H+II H K C++ GK+F + S +++H G K +KC+ECGK+F + SHL H+
Sbjct: 156 YDKYVKVFHKFSNSNRHKIGHTGKKSFKCKECEKSFCMLSHLAQHKR-IHSGEKPYKCKECGKAYNEASNLSTHKR-IHTGKKPYKCEECGKAFNRLSHLTTH-KIIHTGKKPYKCEECGKAFNQSANLTTHKR-IHTGEKPYKCEECGRAFSQSSTLTAH-KIIHAGEKPYKCEECGKAFSQSSTLTTH-KIIHTGEKFYKCEECGKAFSRLSHLTTHKR-IHSGEKPYKCEECGKAFKQSSTLTTHKR------IHAGEKFYKCEVCSKAFSRFSHLTTHKRI-HTGEKPYKCEECGKAFNLSSQLTTHKII-HTGEKPYKCEECGKAFNQSSTLSKHKVIHTG------------------------------EKPYKCEECGKAFNQSSHLTTHK 509 HSP 2 Score: 184.882 bits (468), Expect = 2.823e-50 Identity = 112/314 (35.67%), Postives = 173/314 (55.10%), Query Frame = 1
Query: 139 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQ--RTVHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKMSRMW*KIFRKRN*TFHQRFAHQGIRAFKCS*FCNCFVEKRNLTFHQIIVHEVVKASNCQDGGKSFGCNIYTSHQRIVHQG 1074
CGK+F Q NLT+H+R +H G K +KC+ECG++F S LT H + +H G K ++C+ECG F ++ L HKI+H G K ++C+ECGK+F + +L +H+R +H G P+KC+ECG +F + S LT H+R +H G K ++C+ C F R L H R IH G K ++C+ECGK+F + LT+H+ T K C +CGK+F Q +T++ HK + H G + +KC F + +LT H++I H K C++ GK+F + + +++H G
Sbjct: 271 CGKAFNQSANLTTHKR-IHTGEKPYKCEECGRAFSQSSTLTAH-KIIHAGEKPYKCEECGKAFSQSSTLTT-HKIIHTGEKFYKCEECGKAFSRLSHLTTHKR-IHSGEKPYKCEECGKAFKQSSTLTTHKR-IHAGEKFYKCEVCSKAFSRFSHLTTHKR-IHTGEKPYKCEECGKAFNLSSQLTTHKIIHTGEKPYKCEECGKAFNQSSTLSKHKVI-----------------------------------HTGEKPYKCEECGKAFNQSSHLTTHKMI-HTGEKPYKCEECGKAFNNSSILNRHKMIHTG 542 HSP 3 Score: 169.088 bits (427), Expect = 6.086e-45 Identity = 96/260 (36.92%), Postives = 145/260 (55.77%), Query Frame = 1
Query: 139 CGKSFGQKKNLTSHQRTVHQGIKAFKCQECGKSFGHKSALTLHQRTVHEGIKTFECQECGLLFGRNYDLKRHHKIVHEGIKAFECQECGKSFRQKKNLNSHQRT---------------------------VHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFK 831
CG++F Q LT+H + +H G K +KC+ECGK+F S LT H + +H G K ++C+ECG F R L H +I H G K ++C+ECGK+F+Q L +H+R +H G P+KC+ECG +F S LT H + +H G K ++C+ECG F ++ L +H ++IH G K ++C+ECGK+F Q ++LT+H+ T K C +CGK+F + + HK +H G K +K
Sbjct: 299 CGRAFSQSSTLTAH-KIIHAGEKPYKCEECGKAFSQSSTLTTH-KIIHTGEKFYKCEECGKAFSRLSHLTTHKRI-HSGEKPYKCEECGKAFKQSSTLTTHKRIHAGEKFYKCEVCSKAFSRFSHLTTHKRIHTGEKPYKCEECGKAFNLSSQLTTH-KIIHTGEKPYKCEECGKAFNQSSTLSKH-KVIHTGEKPYKCEECGKAFNQSSHLTTHKMIHTGEKPYKCEECGKAFNNSSILNRHK------MIHTGEKLYK 547 HSP 4 Score: 150.599 bits (379), Expect = 7.682e-39 Identity = 105/297 (35.35%), Postives = 154/297 (51.85%), Query Frame = 1
Query: 355 HKIVHEGIKAFECQECGKSFRQKKNLNSHQRTVHGGIGPFKCQECGNSFGRKSALTLHQRTVHEGIKAFECQECGLLFGRNYDLKRHHRIIHEGIKAFECQECGKSFGQKTNLTSHQR--TVHKGLNCRKCGKSFRQKTTITSHKNLTWQSTVHRGIKCFKMSRMW*KIFRKRN*TFHQRFAHQGIRAFKCS*FCNCFVEKRNLTFHQIIVHEVVKASNCQDGGKSFG-CNIYTSHQRIVHQGINQGI*FSLMW*IFWG*KYFFKAQENVHNRIKLFKCQECGKSFARESHLKAHQR 1236
HKI H G K+F+C+EC KSF +L H+R +H G P+KC+ECG ++ S L+ H+R +H G K ++C+ECG F R L H +IIH G K ++C+ECGK+F Q NLT+H+R T K C +CG++F Q +T+T+HK +H G K +K K F + + + H G + +KC F +LT H+ I H K C++ GK+F + T+H+RI H K +KC+ C K+F+R SHL H+R
Sbjct: 172 HKIGHTGKKSFKCKECEKSFCMLSHLAQHKR-IHSGEKPYKCKECGKAYNEASNLSTHKR-IHTGKKPYKCEECGKAFNRLSHLTTH-KIIHTGKKPYKCEECGKAFNQSANLTTHKRIHTGEKPYKCEECGRAFSQSSTLTAHK------IIHAGEKPYKCEECG-KAFSQSSTLTTHKIIHTGEKFYKCEECGKAFSRLSHLTTHKRI-HSGEKPYKCEECGKAFKQSSTLTTHKRI-------------------------------HAGEKFYKCEVCSKAFSRFSHLTTHKR 426 The following BLAST results are available for this feature:
BLAST of TCONS_00039557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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