TCONS_00039552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039552
Unique NameTCONS_00039552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039552 ID=TCONS_00039552|Name=TCONS_00039552|organism=Clytia hemisphaerica|type=transcript|length=177bp
ACTAACCTGAGTGAATGCCAATCCTTAGCTGTATGCGATACTCTTTCTTA
TGTCTCACAACAAAAGTGGTTGTTGCACTCAACAGGTCGAGAGACATGCG
TGCGATTTCACCTGCGTGTCGATTTCCATTTCGTTCGGGGAGACCGCTCA
CCACCATGTATGCGTCTCCAATTGTTT
Run BLAST on NCBI

transcript from alignment at sc0002141:6946..7122

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039552 ID=TCONS_00039552|Name=TCONS_00039552|organism=Clytia hemisphaerica|type=transcript|length=177bp|location=Sequence derived from alignment at sc0002141:6946..7122 (Clytia hemisphaerica)
AAACAATTGGAGACGCATACATGGTGGTGAGCGGTCTCCCCGAACGAAAT
GGAAATCGACACGCAGGTGAAATCGCACGCATGTCTCTCGACCTGTTGAG
TGCAACAACCACTTTTGTTGTGAGACATAAGAAAGAGTATCGCATACAGC
TAAGGATTGGCATTCACTCAGGTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023892XLOC_023892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039552-exon-sc0002141-1491911889:6946..7122TCONS_00039552-exon-sc0002141-1491911889:6946..7122Clytia hemisphaericaexon
TCONS_00039552-exon-sc0002141-1510915933:6946..7122TCONS_00039552-exon-sc0002141-1510915933:6946..7122Clytia hemisphaericaexon
TCONS_00039552-exon-sc0002141-1575043694:6946..7122TCONS_00039552-exon-sc0002141-1575043694:6946..7122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002141supercontigsc0002141:6946..7122 .
Expression
No biomaterial libraries express this feature.
Blast
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BLAST of TCONS_00039552 vs. Swiss-Prot (Human)
Match: GUC2D (Retinal guanylyl cyclase 1 OS=Homo sapiens GN=GUCY2D PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.285e-21
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = -3 
Query:    5 TIGDAYMVVSGLPERNGNRHAGEIARMSLDLLSATTTFVVRHKKEYRIQLRIGIHSG 175
            TIGDAYMV SGLP+RNG RHA EIA MSLD+LSA  TF +RH  E  +++RIG+HSG
Sbjct:  926 TIGDAYMVASGLPQRNGQRHAAEIANMSLDILSAVGTFRMRHMPEVPVRIRIGLHSG 982
The following BLAST results are available for this feature:
BLAST of TCONS_00039552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GUC2D4.285e-2168.42Retinal guanylyl cyclase 1 OS=Homo sapiens GN=GUCY... [more]
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