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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039548 ID=TCONS_00039548|Name=TCONS_00039548|organism=Clytia hemisphaerica|type=transcript|length=1606bp
NNAAgaattgatctttgttttcccTTTAGTGCGACAAAGTTTGATGAAAC
GTAACATTATTGCGAAGACACGCACAACTTTGGTGAAAGAATGGCGATTT
GGGTCAAGCACATAATTGGAGAACTTGTATCTTTGTTGCGTTTTGTTGAG
AAACTCATTAGTGATTAGTTGATTGTGATCGAAAGAATGAGTTGGAGGAA
TCTTGGCTTCACGATTAGCTTGTTCCAATTCCACCTGACTGAGCCTTATT
TCTTTGGCGGTTAGTGCTGGGAATTCTGATACTTCTTGCGTCATCCACTG
GAATCCATCGATCCACTGGGAAGATTGGTCAACATCGGTCATGGTTGTAC
ACCTTCTTGTTCCGATGTCAGCGATCATGTTGTTTGATTGGACGTAtttc
catgatgtaatgtctgTTAGTCGGTGAATCTCGTTTACGCGGTTGCGGAC
CCACTGCTTGAGTTGTAGCGAAGTGATGTTGATCCAGTAGAGGGTGATTT
GCAAATCTGTGAACTTGGAAGCTCCAGTATGTGTTGAATGGAATGACTTT
CTTACAACTTCACTTGTGTGGGTATTGATGATTGATGCATACAGTTCCCC
TCTTGGTTGAGTATATTCATCCGGTACAAGTCGTGAGCGGGCGAAGATCA
ATTGACAGGAGTAGTCGCCTTGAGCATAGATAGATGAGCATGCTAGATCC
TGGCTTGCATCACCAAAATCGAGAGTTGTGATGTCTAGATTAACTACATC
TGGTGGCACAATAGCACGGTTGAATTTGATGGATTTGAGTTCTTGAATCA
TTTCGAAATGTGATGACCAAAGATGTCTGAGATCGTTGGGTAGAATATCA
TCCCAATCCATTTTGCATTTGACGAGAGTGTGGAGGTCCATTTTCAATGT
TGCGGTAATCGGCGTTAGAAGTCCAGAGATTTCAAACACTTCAGATGCTT
TTGAGACACACTGTCGACGCGTGAGATTGAGTGGtatttctttgatttca
ttGGGTTTCTTGCCTCGATATTTTCTTGCGAAGTTCAATTCTTGGATATT
CAGGCTGATTTGATCTTCCAATGGATACCATTTGAGACCAGCCACTGATA
CGGTCTCACCATCAGCTGGTAGTTTGTCATGTGGTTGTTGATTTGAGAAG
GTGAAtccttttagtgaaaatccacCATGATTGACCACCAGTTCTAAGTT
GTCGGCTAAGTGGTTGGCTTCTGACTGTGATTGATGACCGGTTATGCAGT
CATCCACGTATACATCATCGGTTATGATCTTGTGAACTTCCGGGTAACtg
gtctttgaaaatttttgcagTTTCACGAAGCGCATGCTCGGCCTGGTTCC
CACTTGATTTCACGCCATAGATAAGggtttttattactttctcTTCGGGC
GGTTTATCTGGGTTGAGATTTTCTTCCCACAGATAACGTTGGAGACACCA
GTGAGTTTGATCGAGTTGTATGGTATTATACATTTTAGCAATATCTGTGT
GGATACCAACCTTGTGTCCCCTCCACCGCAGGAAAATTTCTAAGAGCTTA
TTCATGTTATTCCTTCCTTTTGCAATGATGTCGTTGAGTGAGAAGCCACT
TCCGGT Run BLAST on NCBI protein sequence of TCONS_00039548-protein >TCONS_00039548-protein ID=TCONS_00039548-protein|Name=TCONS_00039548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp
MRFVKLQKFSKTSYPEVHKIITDDVYVDDCITGHQSQSEANHLADNLELV
VNHGGFSLKGFTFSNQQPHDKLPADGETVSVAGLKWYPLEDQISLNIQEL
NFARKYRGKKPNEIKEIPLNLTRRQCVSKASEVFEISGLLTPITATLKMD
LHTLVKCKMDWDDILPNDLRHLWSSHFEMIQELKSIKFNRAIVPPDVVNL
DITTLDFGDASQDLACSSIYAQGDYSCQLIFARSRLVPDEYTQPRGELYA
SIINTHTSEVVRKSFHSTHTGASKFTDLQITLYWINITSLQLKQWVRNRV
NEIHRLTDITSWKYVQSNNMIADIGTRRCTTMTDVDQSSQWIDGFQWMTQ
EVSEFPALTAKEIRLSQVELEQANREAKIPPTHSFDHNQLITNEFLNKTQ
QRYKFSNYVLDPNRHSFTKVVRVFAIMLRFIKLCRTKGKTKINSX Run BLAST on NCBI transcript from alignment at sc0002139:22177..23782 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039548 ID=TCONS_00039548|Name=TCONS_00039548|organism=Clytia hemisphaerica|type=transcript|length=1606bp|location=Sequence derived from alignment at sc0002139:22177..23782 (Clytia hemisphaerica)
ACCGGAAGTGGCTTCTCACTCAACGACATCATTGCAAAAGGAAGGAATAA
CATGAATAAGCTCTTAGAAATTTTCCTGCGGTGGAGGGGACACAAGGTTG
GTATCCACACAGATATTGCTAAAATGTATAATACCATACAACTCGATCAA
ACTCACTGGTGTCTCCAACGTTATCTGTGGGAAGAAAATCTCAACCCAGA
TAAACCGCCCGAAgagaaagtaataaaaaccCTTATCTATGGCGTGAAAT
CAAGTGGGAACCAGGCCGAGCATGCGCTTCGTGAAActgcaaaaattttc
aaagaccaGTTACCCGGAAGTTCACAAGATCATAACCGATGATGTATACG
TGGATGACTGCATAACCGGTCATCAATCACAGTCAGAAGCCAACCACTTA
GCCGACAACTTAGAACTGGTGGTCAATCATGgtggattttcactaaaagg
aTTCACCTTCTCAAATCAACAACCACATGACAAACTACCAGCTGATGGTG
AGACCGTATCAGTGGCTGGTCTCAAATGGTATCCATTGGAAGATCAAATC
AGCCTGAATATCCAAGAATTGAACTTCGCAAGAAAATATCGAGGCAAGAA
ACCCaatgaaatcaaagaaataCCACTCAATCTCACGCGTCGACAGTGTG
TCTCAAAAGCATCTGAAGTGTTTGAAATCTCTGGACTTCTAACGCCGATT
ACCGCAACATTGAAAATGGACCTCCACACTCTCGTCAAATGCAAAATGGA
TTGGGATGATATTCTACCCAACGATCTCAGACATCTTTGGTCATCACATT
TCGAAATGATTCAAGAACTCAAATCCATCAAATTCAACCGTGCTATTGTG
CCACCAGATGTAGTTAATCTAGACATCACAACTCTCGATTTTGGTGATGC
AAGCCAGGATCTAGCATGCTCATCTATCTATGCTCAAGGCGACTACTCCT
GTCAATTGATCTTCGCCCGCTCACGACTTGTACCGGATGAATATACTCAA
CCAAGAGGGGAACTGTATGCATCAATCATCAATACCCACACAAGTGAAGT
TGTAAGAAAGTCATTCCATTCAACACATACTGGAGCTTCCAAGTTCACAG
ATTTGCAAATCACCCTCTACTGGATCAACATCACTTCGCTACAACTCAAG
CAGTGGGTCCGCAACCGCGTAAACGAGATTCACCGACTAAcagacattac
atcatggaaaTACGTCCAATCAAACAACATGATCGCTGACATCGGAACAA
GAAGGTGTACAACCATGACCGATGTTGACCAATCTTCCCAGTGGATCGAT
GGATTCCAGTGGATGACGCAAGAAGTATCAGAATTCCCAGCACTAACCGC
CAAAGAAATAAGGCTCAGTCAGGTGGAATTGGAACAAGCTAATCGTGAAG
CCAAGATTCCTCCAACTCATTCTTTCGATCACAATCAACTAATCACTAAT
GAGTTTCTCAACAAAACGCAACAAAGATACAAGTTCTCCAATTATGTGCT
TGACCCAAATCGCCATTCTTTCACCAAAGTTGTGCGTGTCTTCGCAATAA
TGTTACGTTTCATCAAACTTTGTCGCACTAAAgggaaaacaaagatcaat
tcTTNN Coding sequence (CDS) from alignment at sc0002139:22177..23782 >TCONS_00039548 ID=TCONS_00039548|Name=TCONS_00039548|organism=Clytia hemisphaerica|type=CDS|length=1335bp|location=Sequence derived from alignment at sc0002139:22177..23782 (Clytia hemisphaerica)
ATGCGCTTCGTGAAActgcaaaaattttcaaagaccaGTTACCCGGAAGT
TCACAAGATCATAACCGATGATGTATACGTGGATGACTGCATAACCGGTC
ATCAATCACAGTCAGAAGCCAACCACTTAGCCGACAACTTAGAACTGGTG
GTCAATCATGgtggattttcactaaaaggaTTCACCTTCTCAAATCAACA
ACCACATGACAAACTACCAGCTGATGGTGAGACCGTATCAGTGGCTGGTC
TCAAATGGTATCCATTGGAAGATCAAATCAGCCTGAATATCCAAGAATTG
AACTTCGCAAGAAAATATCGAGGCAAGAAACCCaatgaaatcaaagaaat
aCCACTCAATCTCACGCGTCGACAGTGTGTCTCAAAAGCATCTGAAGTGT
TTGAAATCTCTGGACTTCTAACGCCGATTACCGCAACATTGAAAATGGAC
CTCCACACTCTCGTCAAATGCAAAATGGATTGGGATGATATTCTACCCAA
CGATCTCAGACATCTTTGGTCATCACATTTCGAAATGATTCAAGAACTCA
AATCCATCAAATTCAACCGTGCTATTGTGCCACCAGATGTAGTTAATCTA
GACATCACAACTCTCGATTTTGGTGATGCAAGCCAGGATCTAGCATGCTC
ATCTATCTATGCTCAAGGCGACTACTCCTGTCAATTGATCTTCGCCCGCT
CACGACTTGTACCGGATGAATATACTCAACCAAGAGGGGAACTGTATGCA
TCAATCATCAATACCCACACAAGTGAAGTTGTAAGAAAGTCATTCCATTC
AACACATACTGGAGCTTCCAAGTTCACAGATTTGCAAATCACCCTCTACT
GGATCAACATCACTTCGCTACAACTCAAGCAGTGGGTCCGCAACCGCGTA
AACGAGATTCACCGACTAAcagacattacatcatggaaaTACGTCCAATC
AAACAACATGATCGCTGACATCGGAACAAGAAGGTGTACAACCATGACCG
ATGTTGACCAATCTTCCCAGTGGATCGATGGATTCCAGTGGATGACGCAA
GAAGTATCAGAATTCCCAGCACTAACCGCCAAAGAAATAAGGCTCAGTCA
GGTGGAATTGGAACAAGCTAATCGTGAAGCCAAGATTCCTCCAACTCATT
CTTTCGATCACAATCAACTAATCACTAATGAGTTTCTCAACAAAACGCAA
CAAAGATACAAGTTCTCCAATTATGTGCTTGACCCAAATCGCCATTCTTT
CACCAAAGTTGTGCGTGTCTTCGCAATAATGTTACGTTTCATCAAACTTT
GTCGCACTAAAgggaaaacaaagatcaattcTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039548-exon-sc0002139-1491911889:22177..23782 | TCONS_00039548-exon-sc0002139-1491911889:22177..23782 | Clytia hemisphaerica | exon |
| TCONS_00039548-exon-sc0002139-1510915933:22177..23782 | TCONS_00039548-exon-sc0002139-1510915933:22177..23782 | Clytia hemisphaerica | exon |
| TCONS_00039548-exon-sc0002139-1575043694:22177..23782 | TCONS_00039548-exon-sc0002139-1575043694:22177..23782 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002139 | supercontig | sc0002139:22177..23782 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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