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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039541 ID=TCONS_00039541|Name=TCONS_00039541|organism=Clytia hemisphaerica|type=transcript|length=2729bp
TTCTCCAATTGAAATCTTTTATGAAAGTTTGAATAAATATTTATCTTTAG
CAAATAAAACAAAGATTATTGAAAGACACCTAGCTTATGGCTTAGAATTT
CCCCTATCTATAATTTCTTTGCATTCGAAATGATTTGAGATTGGCTTTGA
AGTGAACATTTATGAAACTTGTAGTAGAGAGAGTTCATCTGAAAAATATT
CTCGggtgtttttaaaatgaagaatCACTTGATTGCAACCATCGGTGGAC
TTTACAAATCGGTGTTTTATTGGTGTAATGTCAATtctttggaaaaattg
aaagaaagaattgaaattcgTTTCCATATCCCTACCAGTATACAAAATAT
ATCGTGCAATGGGAATATATTAGATGAAGTATCTTACGAACAGTTGTACA
AGGGACGCTTTGTCAAAAACATCGACTTAGATGTTGAGTTTTCAGGAGGT
GGTATTGACAGGGATATGGTTAAAAAGCGAAGAGGTTTCGCTGCAAAGAT
GCTGGACAGGCTGGAAATCTCTTTTCACGATTCCACCAGACCAGAGAGTT
TAGACATTGATTTTGATATCATGAACATCGACTCCACCATTTCTGACTTG
AAGGCTTCCAATCAAGGAGGACGATTCTATTTCAAGGAAGAATGCTACTT
TGTTTATAAGCAGCACATCATTTTGGCGGATGAACAATTATTCGCTGATT
TATATTTGGACGATGTTGAGAAGCACGAATTTTCCTTCAAACTCCGATTC
ATGTTAAAAAATCGTTTGAATTGCGATAAAGAGGCAGCTGCTTCCAGCAC
CAACAACTTATACTGGTTGTCGCCTCATATTTCCATCATTTTTCCTGGCA
TGAAAACATCATTGGttgatgaaaagaaagaacATCACTTGAGTGTTATA
CCACCAAAAAATGAAGTCAGTTTCAGTGGGTTGCCAGAGAATGAATTCTT
TAAGGTCGGGTATACGAAAGTACGCTACCCTCTGCTGGAAATTGGCTCCT
TTGACGTCACGGATATGAAATGTTGGATAGAGGACACTTTTGGTATTCCA
TGCGAAAAGCAATTTATCTATCGTCACCATGGTCGGCGTACTATCACAAT
ACCCAGTGATATTCTGTTGAATGATTGGCAAACCACCGCCATCTCATATT
TATTCTTCGTCATCATTGGAAATGAAACTGAACAGTTTGAACCATTCGAT
AGCAAGTCGCATAGTGAACGATTTCCAGGGAAtttctcttttgttttaag
CGGCGGGGAAGATTTCAATCACTCTGGAGTTTTAAATGATAATGAAACTA
TTGAGTCTTACATCgaacaaaactttaaaatcccGCAGAATAAACAGTGT
TTATTTTACCAGAGCAGACGTGTTGAGCACGACGACCTCATGGTTCTTCA
GATTAAAGCTTCATGGGAACACTTTCTCTCTCCGTCTCAATCGAATAATC
GAGGCAAAACTTATGAACTTGTTCTTGCCTCCCAAGCAAATGATGTTGAT
TTTGATTTGATGGAAGCCATCCGAGAACTCGGTATCCGTCACTTTCGGTC
TATTGTTATTCGCCATGATGGTGATATGGAAGTTTTATGTGAATTTCCTT
TTTCTGAGGTCCCTCGAAAGCAGACAGAGCAGTACCAATGGCTATGCAAA
CGAATAGTTCAACAGCATCCTAAGATCTCTCCAAATGCAATCACCTTGAT
CCATCAAGGCCAATCTATCAAGGGGAATCATGGTTTAGAGCAATGCTTGC
TCGCCAATGATGGTGAGGATCTAGTACTAACAATGGCAATCAGTCATTAT
AGTTTCGACATTTCTTTGGAAGAGTCATCTGAAGAAatcaaaattaactt
tttagGTGGTCAATTTACTATCTATCTTAACAAAGAGGCTGGTAGTAAAA
CTCATGACATTAACAATGTTAAGCGCGAGATTTCGAAAGCCAAAAATATT
CCTCCTCATTTGCAAACTTTGTTGCACGAGAAGGAGGAATTGGCAGATCG
TGTCAAGCTTGCTCAATTTCAACCACCAGTTGAATTGAATCTTTTACTGA
AAGAAGCAAATATTGTGATAGTGAGGTTGTCCATTACCTTCTTTGAATGT
TCACGAAAGCCGCTTAAAATGAAGGAGACAGACTCGGTGTTCgacatcaa
aaagaaaattgaagctTTATCGGGTGTGTCGCATGAATCGATGTTTGTCC
GCCGCTCTGGTTCCAACATAGAAGTGAATGATGACGCTCGTATTTGGACC
TTGAATGGAGACGAATTATTTCTAACAAAGAAAATATCCTTTTCCATCAT
CGAAGAGGAAAAGATGACCACCGAGTATTACGCGATTGAAAATTATGACC
GTGATACCGTCGAAACTTTGCGAAGTATATTGCAACAGCGACCATTGTTT
TCGCGAAAAGTGATGGAACTTGACAATCGAGAAGGCTTTGTGTCATCGAC
AAAATTAAAAGATGTGCACTCGACCGTCATTCACTTCAATATCCATTCAA
AGTCAGAAAAGACGAAAAAGTGTGCTTGCAACATCTCCTAAAAACGTTTT
CGCAATACTTAAGTACTGATACTTGACCGACTGAACAAGTTTCTCCATTa
atagaaaaccggttttttatCAAGCGTTattcttatatattttcaaaccg
TAGTGTGCACTGTATGTTTCGTTGTTCaatatttatatatattttaatgt
gtaaagaaaaacaaagtatTTTTGAGTCA Run BLAST on NCBI protein sequence of TCONS_00039541-protein >TCONS_00039541-protein ID=TCONS_00039541-protein|Name=TCONS_00039541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=774bp
MKNHLIATIGGLYKSVFYWCNVNSLEKLKERIEIRFHIPTSIQNISCNGN
ILDEVSYEQLYKGRFVKNIDLDVEFSGGGIDRDMVKKRRGFAAKMLDRLE
ISFHDSTRPESLDIDFDIMNIDSTISDLKASNQGGRFYFKEECYFVYKQH
IILADEQLFADLYLDDVEKHEFSFKLRFMLKNRLNCDKEAAASSTNNLYW
LSPHISIIFPGMKTSLVDEKKEHHLSVIPPKNEVSFSGLPENEFFKVGYT
KVRYPLLEIGSFDVTDMKCWIEDTFGIPCEKQFIYRHHGRRTITIPSDIL
LNDWQTTAISYLFFVIIGNETEQFEPFDSKSHSERFPGNFSFVLSGGEDF
NHSGVLNDNETIESYIEQNFKIPQNKQCLFYQSRRVEHDDLMVLQIKASW
EHFLSPSQSNNRGKTYELVLASQANDVDFDLMEAIRELGIRHFRSIVIRH
DGDMEVLCEFPFSEVPRKQTEQYQWLCKRIVQQHPKISPNAITLIHQGQS
IKGNHGLEQCLLANDGEDLVLTMAISHYSFDISLEESSEEIKINFLGGQF
TIYLNKEAGSKTHDINNVKREISKAKNIPPHLQTLLHEKEELADRVKLAQ
FQPPVELNLLLKEANIVIVRLSITFFECSRKPLKMKETDSVFDIKKKIEA
LSGVSHESMFVRRSGSNIEVNDDARIWTLNGDELFLTKKISFSIIEEEKM
TTEYYAIENYDRDTVETLRSILQQRPLFSRKVMELDNREGFVSSTKLKDV
HSTVIHFNIHSKSEKTKKCACNIS Run BLAST on NCBI transcript from alignment at sc0002138:6314..9042 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039541 ID=TCONS_00039541|Name=TCONS_00039541|organism=Clytia hemisphaerica|type=transcript|length=2729bp|location=Sequence derived from alignment at sc0002138:6314..9042 (Clytia hemisphaerica)
TGACTCAAAAatactttgtttttctttacacattaaaatatatataaata
ttGAACAACGAAACATACAGTGCACACTAcggtttgaaaatatataagaa
tAACGCTTGataaaaaaccggttttctattAATGGAGAAACTTGTTCAGT
CGGTCAAGTATCAGTACTTAAGTATTGCGAAAACGTTTTTAGGAGATGTT
GCAAGCACACTTTTTCGTCTTTTCTGACTTTGAATGGATATTGAAGTGAA
TGACGGTCGAGTGCACATCTTTTAATTTTGTCGATGACACAAAGCCTTCT
CGATTGTCAAGTTCCATCACTTTTCGCGAAAACAATGGTCGCTGTTGCAA
TATACTTCGCAAAGTTTCGACGGTATCACGGTCATAATTTTCAATCGCGT
AATACTCGGTGGTCATCTTTTCCTCTTCGATGATGGAAAAGGATATTTTC
TTTGTTAGAAATAATTCGTCTCCATTCAAGGTCCAAATACGAGCGTCATC
ATTCACTTCTATGTTGGAACCAGAGCGGCGGACAAACATCGATTCATGCG
ACACACCCGATAAagcttcaattttctttttgatgtcGAACACCGAGTCT
GTCTCCTTCATTTTAAGCGGCTTTCGTGAACATTCAAAGAAGGTAATGGA
CAACCTCACTATCACAATATTTGCTTCTTTCAGTAAAAGATTCAATTCAA
CTGGTGGTTGAAATTGAGCAAGCTTGACACGATCTGCCAATTCCTCCTTC
TCGTGCAACAAAGTTTGCAAATGAGGAGGAATATTTTTGGCTTTCGAAAT
CTCGCGCTTAACATTGTTAATGTCATGAGTTTTACTACCAGCCTCTTTGT
TAAGATAGATAGTAAATTGACCACctaaaaagttaattttgatTTCTTCA
GATGACTCTTCCAAAGAAATGTCGAAACTATAATGACTGATTGCCATTGT
TAGTACTAGATCCTCACCATCATTGGCGAGCAAGCATTGCTCTAAACCAT
GATTCCCCTTGATAGATTGGCCTTGATGGATCAAGGTGATTGCATTTGGA
GAGATCTTAGGATGCTGTTGAACTATTCGTTTGCATAGCCATTGGTACTG
CTCTGTCTGCTTTCGAGGGACCTCAGAAAAAGGAAATTCACATAAAACTT
CCATATCACCATCATGGCGAATAACAATAGACCGAAAGTGACGGATACCG
AGTTCTCGGATGGCTTCCATCAAATCAAAATCAACATCATTTGCTTGGGA
GGCAAGAACAAGTTCATAAGTTTTGCCTCGATTATTCGATTGAGACGGAG
AGAGAAAGTGTTCCCATGAAGCTTTAATCTGAAGAACCATGAGGTCGTCG
TGCTCAACACGTCTGCTCTGGTAAAATAAACACTGTTTATTCTGCgggat
tttaaagttttgttcGATGTAAGACTCAATAGTTTCATTATCATTTAAAA
CTCCAGAGTGATTGAAATCTTCCCCGCCGcttaaaacaaaagagaaaTTC
CCTGGAAATCGTTCACTATGCGACTTGCTATCGAATGGTTCAAACTGTTC
AGTTTCATTTCCAATGATGACGAAGAATAAATATGAGATGGCGGTGGTTT
GCCAATCATTCAACAGAATATCACTGGGTATTGTGATAGTACGCCGACCA
TGGTGACGATAGATAAATTGCTTTTCGCATGGAATACCAAAAGTGTCCTC
TATCCAACATTTCATATCCGTGACGTCAAAGGAGCCAATTTCCAGCAGAG
GGTAGCGTACTTTCGTATACCCGACCTTAAAGAATTCATTCTCTGGCAAC
CCACTGAAACTGACTTCATTTTTTGGTGGTATAACACTCAAGTGATgttc
tttcttttcatcaaCCAATGATGTTTTCATGCCAGGAAAAATGATGGAAA
TATGAGGCGACAACCAGTATAAGTTGTTGGTGCTGGAAGCAGCTGCCTCT
TTATCGCAATTCAAACGATTTTTTAACATGAATCGGAGTTTGAAGGAAAA
TTCGTGCTTCTCAACATCGTCCAAATATAAATCAGCGAATAATTGTTCAT
CCGCCAAAATGATGTGCTGCTTATAAACAAAGTAGCATTCTTCCTTGAAA
TAGAATCGTCCTCCTTGATTGGAAGCCTTCAAGTCAGAAATGGTGGAGTC
GATGTTCATGATATCAAAATCAATGTCTAAACTCTCTGGTCTGGTGGAAT
CGTGAAAAGAGATTTCCAGCCTGTCCAGCATCTTTGCAGCGAAACCTCTT
CGCTTTTTAACCATATCCCTGTCAATACCACCTCCTGAAAACTCAACATC
TAAGTCGATGTTTTTGACAAAGCGTCCCTTGTACAACTGTTCGTAAGATA
CTTCATCTAATATATTCCCATTGCACGATATATTTTGTATACTGGTAGGG
ATATGGAAAcgaatttcaattctttctttcaatttttccaaagaATTGAC
ATTACACCAATAAAACACCGATTTGTAAAGTCCACCGATGGTTGCAATCA
AGTGattcttcattttaaaaacaccCGAGAATATTTTTCAGATGAACTCT
CTCTACTACAAGTTTCATAAATGTTCACTTCAAAGCCAATCTCAAATCAT
TTCGAATGCAAAGAAATTATAGATAGGGGAAATTCTAAGCCATAAGCTAG
GTGTCTTTCAATAATCTTTGTTTTATTTGCTAAAGATAAATATTTATTCA
AACTTTCATAAAAGATTTCAATTGGAGAA Coding sequence (CDS) from alignment at sc0002138:6314..9042 >TCONS_00039541 ID=TCONS_00039541|Name=TCONS_00039541|organism=Clytia hemisphaerica|type=CDS|length=2325bp|location=Sequence derived from alignment at sc0002138:6314..9042 (Clytia hemisphaerica)
TTAGGAGATGTTGCAAGCACACTTTTTCGTCTTTTCTGACTTTGAATGGA
TATTGAAGTGAATGACGGTCGAGTGCACATCTTTTAATTTTGTCGATGAC
ACAAAGCCTTCTCGATTGTCAAGTTCCATCACTTTTCGCGAAAACAATGG
TCGCTGTTGCAATATACTTCGCAAAGTTTCGACGGTATCACGGTCATAAT
TTTCAATCGCGTAATACTCGGTGGTCATCTTTTCCTCTTCGATGATGGAA
AAGGATATTTTCTTTGTTAGAAATAATTCGTCTCCATTCAAGGTCCAAAT
ACGAGCGTCATCATTCACTTCTATGTTGGAACCAGAGCGGCGGACAAACA
TCGATTCATGCGACACACCCGATAAagcttcaattttctttttgatgtcG
AACACCGAGTCTGTCTCCTTCATTTTAAGCGGCTTTCGTGAACATTCAAA
GAAGGTAATGGACAACCTCACTATCACAATATTTGCTTCTTTCAGTAAAA
GATTCAATTCAACTGGTGGTTGAAATTGAGCAAGCTTGACACGATCTGCC
AATTCCTCCTTCTCGTGCAACAAAGTTTGCAAATGAGGAGGAATATTTTT
GGCTTTCGAAATCTCGCGCTTAACATTGTTAATGTCATGAGTTTTACTAC
CAGCCTCTTTGTTAAGATAGATAGTAAATTGACCACctaaaaagttaatt
ttgatTTCTTCAGATGACTCTTCCAAAGAAATGTCGAAACTATAATGACT
GATTGCCATTGTTAGTACTAGATCCTCACCATCATTGGCGAGCAAGCATT
GCTCTAAACCATGATTCCCCTTGATAGATTGGCCTTGATGGATCAAGGTG
ATTGCATTTGGAGAGATCTTAGGATGCTGTTGAACTATTCGTTTGCATAG
CCATTGGTACTGCTCTGTCTGCTTTCGAGGGACCTCAGAAAAAGGAAATT
CACATAAAACTTCCATATCACCATCATGGCGAATAACAATAGACCGAAAG
TGACGGATACCGAGTTCTCGGATGGCTTCCATCAAATCAAAATCAACATC
ATTTGCTTGGGAGGCAAGAACAAGTTCATAAGTTTTGCCTCGATTATTCG
ATTGAGACGGAGAGAGAAAGTGTTCCCATGAAGCTTTAATCTGAAGAACC
ATGAGGTCGTCGTGCTCAACACGTCTGCTCTGGTAAAATAAACACTGTTT
ATTCTGCgggattttaaagttttgttcGATGTAAGACTCAATAGTTTCAT
TATCATTTAAAACTCCAGAGTGATTGAAATCTTCCCCGCCGcttaaaaca
aaagagaaaTTCCCTGGAAATCGTTCACTATGCGACTTGCTATCGAATGG
TTCAAACTGTTCAGTTTCATTTCCAATGATGACGAAGAATAAATATGAGA
TGGCGGTGGTTTGCCAATCATTCAACAGAATATCACTGGGTATTGTGATA
GTACGCCGACCATGGTGACGATAGATAAATTGCTTTTCGCATGGAATACC
AAAAGTGTCCTCTATCCAACATTTCATATCCGTGACGTCAAAGGAGCCAA
TTTCCAGCAGAGGGTAGCGTACTTTCGTATACCCGACCTTAAAGAATTCA
TTCTCTGGCAACCCACTGAAACTGACTTCATTTTTTGGTGGTATAACACT
CAAGTGATgttctttcttttcatcaaCCAATGATGTTTTCATGCCAGGAA
AAATGATGGAAATATGAGGCGACAACCAGTATAAGTTGTTGGTGCTGGAA
GCAGCTGCCTCTTTATCGCAATTCAAACGATTTTTTAACATGAATCGGAG
TTTGAAGGAAAATTCGTGCTTCTCAACATCGTCCAAATATAAATCAGCGA
ATAATTGTTCATCCGCCAAAATGATGTGCTGCTTATAAACAAAGTAGCAT
TCTTCCTTGAAATAGAATCGTCCTCCTTGATTGGAAGCCTTCAAGTCAGA
AATGGTGGAGTCGATGTTCATGATATCAAAATCAATGTCTAAACTCTCTG
GTCTGGTGGAATCGTGAAAAGAGATTTCCAGCCTGTCCAGCATCTTTGCA
GCGAAACCTCTTCGCTTTTTAACCATATCCCTGTCAATACCACCTCCTGA
AAACTCAACATCTAAGTCGATGTTTTTGACAAAGCGTCCCTTGTACAACT
GTTCGTAAGATACTTCATCTAATATATTCCCATTGCACGATATATTTTGT
ATACTGGTAGGGATATGGAAAcgaatttcaattctttctttcaatttttc
caaagaATTGACATTACACCAATAAAACACCGATTTGTAAAGTCCACCGA
TGGTTGCAATCAAGTGattcttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00039541-exon-sc0002138-1491911889:6314..9042 | TCONS_00039541-exon-sc0002138-1491911889:6314..9042 | Clytia hemisphaerica | exon |
| TCONS_00039541-exon-sc0002138-1510915933:6314..9042 | TCONS_00039541-exon-sc0002138-1510915933:6314..9042 | Clytia hemisphaerica | exon |
| TCONS_00039541-exon-sc0002138-1575043694:6314..9042 | TCONS_00039541-exon-sc0002138-1575043694:6314..9042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002138 | supercontig | sc0002138:6314..9042 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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