TCONS_00039540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039540
Unique NameTCONS_00039540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length131

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039540 ID=TCONS_00039540|Name=TCONS_00039540|organism=Clytia hemisphaerica|type=transcript|length=131bp
AATGTAAAGTGTAACACTGCACGAAAGCCACGTAAGTAGTTCATTGTAGA
TGATAAAAGAGATATTTGTAGATTGCTGCAGTTtcattaaaaattggaaa
tttctgACTTCGATTCACGGCTTCGCTTCTT
Run BLAST on NCBI

transcript from alignment at sc0002137:23742..23872

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039540 ID=TCONS_00039540|Name=TCONS_00039540|organism=Clytia hemisphaerica|type=transcript|length=131bp|location=Sequence derived from alignment at sc0002137:23742..23872 (Clytia hemisphaerica)
AAGAAGCGAAGCCGTGAATCGAAGTcagaaatttccaatttttaatgaAA
CTGCAGCAATCTACAAATATCTCTTTTATCATCTACAATGAACTACTTAC
GTGGCTTTCGTGCAGTGTTACACTTTACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023880XLOC_023880Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039540-exon-sc0002137-1491911889:23742..23872TCONS_00039540-exon-sc0002137-1491911889:23742..23872Clytia hemisphaericaexon
TCONS_00039540-exon-sc0002137-1510915933:23742..23872TCONS_00039540-exon-sc0002137-1510915933:23742..23872Clytia hemisphaericaexon
TCONS_00039540-exon-sc0002137-1575043694:23742..23872TCONS_00039540-exon-sc0002137-1575043694:23742..23872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002137supercontigsc0002137:23742..23872 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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