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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039536 ID=TCONS_00039536|Name=TCONS_00039536|organism=Clytia hemisphaerica|type=transcript|length=1069bp
GTCTGATAAGTTTCCCGCGTTTTCGTCTGAAAATCTATTACCGCACACCA
GACACCGAGACCACACACAGCGTACACTGGAAAGCTGATTTTGGATTAAT
CAAAAATGGGAATCCTGGAAAAGATTCAAGATCTGTCTCCTACTGCTGGG
AAAAAGTTCACAGATTATGGATTTGCAAACGATTCTATGACTTTGAGGAA
CTTGTATTTGACAGTTTAAGTGAGTTCTTTCCcgaaaaaacaatgcaaaa
tattaaactcaaatcaaaggTGTGGACCATCATTAGGGGAGGAGAAGTTA
AGATCagattgaaaaatcataaaaaagataACTGTCAATATGGATTTTAG
TTTGATGCCTATTGAATTAATGAAGATGATTGTCTCCTATTTGGACAATA
AAAGCTGCAGAAATATTGCTCTAACATCAAATGGAATGAGAAACCTTGTC
TTTGAAAAGATCTGGTCGAAACCAAGCTTTCATAAACAAAAAGATATTGA
TTTCCTTGGTAATATTTCACATCTGCCGATTCGCGAGTTGAATGTTGgag
atttttcttgttcatgGGTTGAAATTGTTGGAATGATACCTAGCCTTCAA
TTGTTACATGTCAATGCTTCTTCAAACAAGCCTTGCGAACCGTTTGACAC
ACAATTGCGTCATTTGAGGGTTCCTATTGTTATTCACACCAGTGCCTTTA
ATCTTGGAggagaaaattttgatcatCTTTTGTCAATCCTTGAAGCTATT
ACAGTAAAAGAAATCATCATCGACCATTCTTCGTGGCCGCACGATGGTTC
GCGATGGTCCTATGAGCGCTTCAAGCTACTTGCTGATAACTTTTATATAT
CTTGTGTTTNTTTTTTTAGACTAAGATTTAAGATACCTTCGCCAATCTTG
GGAATCTCCATTTTTCGATAAGTTATTCGCGCTTTTCGTGACGATCTCTC
TCATGTAAATTTTATGACCACCAGGATTGGCGAAGTTTGTGAAGTTGAAG
CACTCGAAGAATTGGCTTTTTCAATCATCTGCGGTGGAGCTCAAGTTATC
TGAAATTGGAATCGTCTAA Run BLAST on NCBI transcript from alignment at sc0002137:12558..21147- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039536 ID=TCONS_00039536|Name=TCONS_00039536|organism=Clytia hemisphaerica|type=transcript|length=8590bp|location=Sequence derived from alignment at sc0002137:12558..21147- (Clytia hemisphaerica)
GTCTGATAAGTTTCCCGCGTTTTCGTCTGAAAATCTATTACCGCACACCA
GACACCGAGACCACACACAGCGTACACTGGAAAGCTGATTTTGGATTAAT
CAAAAATGGGAATCCTGGAAAAGATTCAAGATCTGTCTCCTACTGCTGGG
AAAAAGTTCACAGGTAACTTAAATATTTTTAAAGGAAGCTTTTTTTTGAA
ATATTTCATCAAATCAAGCAAAGAATGTCCTTATATCTTTAACTTTTTCT
GCCACAACAAAAGTATGATGGCCATAGCCGCTGGATCCACTGAGTTGGAT
GATCTCTTCAAGCAGGCATGCTAGCTGAGTGGCATTTTTGAATGCAGTAT
CCATTTTAAGTTCAAATAACGTCTATTGACGTTTGTGGGTGGGTGGGTTA
ACAGCCAGTGACGTTAGTGACGTTATTTCAACTTTTGCTAAACATCGATT
TTCAGTAAAATCTTTACCCTTTCAAAACGTCAATTGACGTTATTTGAACT
TAAAATCGATTTGTGAGAAGTGACCCCTTAGTCGGAGGACAATTTTTTGG
GAGAATAATATCTTTGTTGGTTATTTTGTTTTGCTGTTAAGATTTTATTT
AAACAAAAAACTGAAAGTTCTTCCCTTGTTCATTTTAAGATTATGGATTT
GCAAACGATTCTANACATTACTGAGCAGCCTTGAACTTTTTGAGTTAAAA
AAATTACCTCAAAGAAATCATGACTTTTGATTATTAAACATAAAAAATAT
TGCCAGGCTATAACTTACGTTTGCATTGTCAGTTGAATTGCCAACAGGTA
CGACTGATGCATCGCTGTCATCACCCCCACTCATATCCTTAAAAAATTGA
AAGTACATTTTTGAAGCAAACATCTTAGGAGGATTTATTCATTTTTTTAG
TTCCAAGCAGTTGACAGTAAAGTTTGTAGAACTATAAAACAGCTGCATTC
TGGCATATTCCTGACTGAGATAAAAGTGTTAAGAAAAATCCCTGAATACT
TACAACAATAAATATAGGTTAAGAATCTCTTCTTGTAGTACTTATAAAAA
GGAACACAGTAGAAGAACAGCTATATTTGTGTTTTCAAATCAAACTGTCA
CAAAGGAAAATTCTGTGAACAATATGTGATCAAAATGCCAAAGTTTAATT
TGCCACTGGCACATTGGGGAAAACATGTGTGAGTGGTGAATATTCCCCCA
CAATCCTCATTGTTTTTTGCCTCAGTTTCTTTTTCATGAGACTGTCAATC
AAATCTTTTGCCTCAGTTTAGTTTGCATGGTAAACAAAACTGTCAATCAA
ATTTCATAAGGATCTTCATTTTTGATTTTCTCAACTTAAATTTTTCAATT
TCAATTTGATTCAAAAACATATTTACTGGAAAAAAAAAGGACACCACCAA
GATTAGAATCATTAGCAGCCTTAAACAATGATCTGTCCTTAAGTTACAAC
TGTTGTGTGAGCTTGTGGACACAAGGTTCTATATATAAATTTAAAGCTTG
AGATGATACAGTAAAGGTTCGATGTATCTAGTTCACATTATAAATTTGGT
ATTCATATTACAAAAAAATACTCAAAAAATACTTAGCTTTTTCATATCAC
CACCAATCTGGTCTGCTTGGTTATGCTGACAATGACTGCGAGACCATCAC
TATCAGCAAATGTGCTTTCGTTTCCTTTATCAAAAACTTCTTTCTGTAAG
ATAGACTGGCTCTGGCAGACTGGGTCTCATCCAAAGCACAAAATGCTTCC
TTCGGTCGCCAGCATATATACACATATTTCCAGGCCACACATACCACTGC
ATCTCACTCCAACAACAAGCACCACAAGAATCAAGACATTCAATCATAAT
ATGATGAAATCCCTTAAATTTTTCTAGACCTGTAGACGATCCGATCCAAA
CACATCTTGTTGTTTTTGCAGGATTCCGTTTTTCCGATTATTCACTGGAT
GTAGTTTCTAGATTGCAAACCTGTATCCAGTGAACGGAGGACACAAAAAT
GAGAGGACGCGATTTGCCTACTACATACGCGGTCTGATAAGTTTCCCGCG
TTTTCGTCTGAAAATCTATTACCGCACACCAGACACCGAGACCACACACA
GCGTACACTGGAAAGCTGATTTTGGATTAATCAAAAATGGGAATCCTGGA
AAAGATTCAAGATCTGTCTCCTACTGCTGGGAAAAAGTTCACAGGTAACT
TAAATATTTTTAAAGGAAGCTTTTTTTTGAAATATTTCATCAAATCAAGC
AAAGAATGTCCTTATATCTTTAACTTTTTCTGCCACAACAAAAGTATGAT
GGCCATAGCCGCTGGATCCACTGAGTTGGATGATCTCTTCAAGCAGGCAT
GCTAGCTGAGTGGCATTTTTGAATGCAGTATCCATTTTAAGTTCAAATAA
CGTCTATTGACGTTTGTGGGTGGGTGGGTTAACAGCCAGTGACGTTAGTG
ACGTTATTTCAACTTTTGCTAAACATCGATTTTCAGTAAAATCTTTACCC
TTTCAAAACGTCAATTGACGTTATTTGAACTTAAAATCGATTTGTGAGAA
GTGACCCCTTAGTCGGAGGACAATTTTTTGGGAGAATAATATCTTTGTTG
GTTATTTTGTTTTGCTGTTAAGATTTTATTTAAACAAAAAACTGAAAGTT
CTTCCCTTGTTCATTTTAAGATTATGGATTTGCAAACGATTCTATGACTT
TGAGGAACTTGTATTTGACAGTTTAAGTGAGTTCTTTCCCGAAAAAACAA
TGCAAAATATTAAACTCAAATCAAAGGTGTGGACCATCATTAGGGGAGGA
GAAGTTAAGGTAAGTGAAAGTGGTTTCTTATTCTTGGGGAGAAAAATGGA
TGACTACTATACTTAAATCAAATTAATTTTCACAAGATAAAATTTTGTGA
CTTGGCAAATTTTTGCCATTTTCAAGAAATTAAATCTTGCTAAAACATTT
AGGATCACTCATTCATAAAATTAAATCCACATGAAATTTTTCCAACCCAC
TAGGCGAAAAAACCAGTCCAAATCCTACACTTTTCCCAAAAAAAATTACA
ATTTCAGGCTTGCTCGCAAAATTAAATATATAAAGATTTTTCCAACATAT
AGATACAATGAAAATTTCGTGAATTTTTATGGTTGCATATTTTAATCTCG
CAAAATTTAATCTGATTAAAGTACTTCAATCACACCCTTTTTCCATTCTT
TTTGTCAAAATTCACTATTCAGGGGAGCCATCCAAACTAAAACTTGCCAT
ATGAAAAATATTGGGAGGGTTTGAGTTGCTTACGTCTAGGTTTTCCAAAG
CTTTTCAAAATTTTCACGTTGGGTTCGCTTCACTGCTAAATAATCTTTGG
GCAAAAACTTTTTTATTTATTGGTTTACGGGCCCGCCAATGTTATTTTTG
CTTAAATCAAATAAAAATAAAATAGAGATTTCAAAAACCTTTATTTATTT
TTTCTCCTCCAACATGCAAAAAAGAGGTAAGAAATAAAAAAACTTTACTT
TAAACAGAAAAGAAGACTTTTCTTTAAACAGAAAAGAAGAGAATGAGAGA
GAGGGTTTAGATATCGTAATGATATAACNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
TTTTTTTTTCATTTCTTTCTTTTTTTATAATCTCTTTTATTTAAAATCCT
TTCTCTGATTTTACTGTTGAAATTTGAGAGTAGGTATAAAAAGATGAAAG
ATAAAAGATGAAAGGCTAATTAAATTGTTTAACTGAAAACCATTGTTAAA
ATGAAAGTAGAGAACAAAATTTTTTAAAGTAATACATTAAAGTCTATTGA
CAAAAGTGATAATTCAAAGAGAAATTTGAAGACCATCTATTTTCTTTCTC
TTTGTCTGAGATTGTATTAACCATTTCTGCTATTCTTTTTTAAAAGTCTC
TTTCTTTTTCCTATAAAATTGCTATTATAACGATTGTTCTTTGTACTGTG
TTGAACAGATCAGATTTTTTTTTCAAGAGAAATTTTTTTCTGCATGTGTG
AGAGTTGTTGCATAGAAACTTGTATATTTTTGAGCTCTGACTGCTCACTT
GGCAGCTTGAGATAATTTTATTTTTTTATTTCCTCCGATTTTAGATTCTA
AAAAAGAAAATAAAAAAAAATAAAAAGGTTAATTTTATTTTTATTTTTTT
TCCATCCTCCTCTCCAAAATTTTACCTCAAAAAGCCCGTAAACCAGAAAA
TAAAAAAGTAGTTGCCTTAACGCTTATAAGCATATGAAGGCTCAGATTTG
GTAAATTCTTAAGCATGACATAAGCATATAAGCGAGCCTGAAATATAATT
GCTTATGGAATCAAAATTTAACATTTTGTTATTTGATTTCCACAAAAAAG
AAAACACTCCATTGCTTTTACATTAATCGTCTTCTAACAGGAAAATAGAA
TACATTCCATTGGGTTGGTGTAATTTAAGATGCACGATCTAACGATTTAC
GATTCACGATGCACGATCCATGCATAAAGTATGCTGATTATTCCGAATAA
TTATCATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTCTTAAAGCAAATAAAAGAATATATTGGCTAACAATGTGTTTTGCG
GACCATAATGTACGAAGCAAAAAACGGGTGCTCTATTATGAGAAAAAATT
TTCTTTCGGTAAACAATTCCCCTATATTGATTCAAGCTATGAAAAAGAGA
GAGTACAGAAGGTGAATGCACGTGGCCTTCACTTAACTGAATTTAAATTG
AAAAGAGAATAATTTGTATAATCTTACATAAATGATGTTTTTAAAAATAA
TTGAGTTTCAGCGAATGAAAGTTTGTACATTGGCTAAATATTTTATCATG
ATTAGCACGATTACGCATGAATTAACATATTTTATGCACGGATCGCGAAT
CGTACATCGTAAATCGTTAGATCGTGCATCTTAAATTACACCAACCCCAT
TCCATTGCGTTCAGATTTTCCCGCGATTTTTTTCCCTTTCGATTTCGAAT
TATGGCGTTCTATGAATCGAATGTTTACAAATTATATAGTATATGACGTT
AGAAAATTAACAACTCATAAGCATATAGTAAGCATATACTGAGCCTAGAT
TCGCTGCGGTCTTAAACATATCTGAGCCTGAGCAAGGGGCAGACACTTGC
TTATAAAAAAAACATGTATTATAGGAACTATAATTTTGTGCATTTCTCAC
TTGAAGTTGAAAGAAAATTAGAGCTGTTATTGTGCGGTGGTGTCCGGTGG
GCGTCCTGGATGCATGCAAAATTTTGCTTTGCTTCAATCCTGGAAAGTGA
TAGAAAATGACCGTCATTCAAATAATTCACCTCTCTCTTTCTACTTTCTA
TCTTTCTTTCTACTTTTGTGTTTTCTAAGTTTCTGAGACTCATTTTCTGA
TTTCTGTAGCATCTTTTACAAAAAATCCTTTTTGTAGGGGGGAATTTTTT
TTGCGAAAAATGCCAAAGGGGGGGGGGGCAAAAGGGGGGTAGTAGTTGTA
AACAAAAATAATGGAGGGGGGGTAATTGGAAAAATTTTCTAAACTTGAGG
ACCTAATTGCTGGGGTTTTGGAAATTTCACTTTTTAAAAAACCTCAAGTA
GGGTAAATGTAGGCTAAAATCAGGCTATTTAAAGCAAAATAAAGGACTTT
CCGAAATTTGATAAGCAGGAGAGGGTCCAGAGGGTTGAAAAATAGAAAAA
ATAACACTTGGGAGCGGGATGAGCGTTTAATTGGTATGCGATTAGACAGA
AAGGTCTGTCATGACTAGATAGCCAGGACTATCTACCAAGCATTCATGAT
AAAATTAACATCATTGATTTCAGATCAGATTGAAAAATCATAAAAAAGAT
AACTGTCAATATGGATTTTAGTTTGATGCCTATTGAATTAATGAAGATGA
TTGTCTCCTATTTGGACAATAAAAGCTGCAGAAATATTGCTCTAACATCA
AATGGAATGAGAAACCTTGTCTTTGAAAAGATCTGGTCGAAACCAAGCTT
TCATAAACAAAAAGATATTGATTTCCTTGGTAATATTTCACATCTGCCGA
TTCGCGAGTTGAATGTTGGAGATTTTTCTTGTTCATGGGTTGAAATTGTT
GGAATGATACCTAGCCTTCAATTGTTACATGTCAATGCTTCTTCAAACAA
GCCTTGCGAACCGTTTGACACACAATTGCGTCATTTGAGGGTTCCTATTG
TTATTCACACCAGTGCCTTTAATCTTGGAGGAGAAAATTTTGATCATCTT
TTGTCAATCCTTGAAGCTATTACAGTAAAAGAAATCATCATCGACCATTC
TTCGTGGCCGCACGATGGTTCGCGATGGTCCTATGAGCGCTTCAAGCTAC
TTGCTGATAACTTTTATATATCTTGTGTTTNTTTTTTTAGACTAAGATTT
AAGATACCTTCGCCAATCTTGGGAATCTCCATTTTTCGATAAGTTATTCG
CGCTTTTCGTGACGATCTCTCTCATGTAAATTTTATGACCACCAGGATTG
GCGAAGTTTGTGAAGTTGAAGCACTCGAAGAATTGGCTTTTTCAATCATC
TGCGGTGGAGCTCAAGTTATCTGAAATTGGAATCGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039536-exon-sc0002137-1575043694:20985..21147 | TCONS_00039536-exon-sc0002137-1575043694:20985..21147 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1575043694:18339..18477 | TCONS_00039536-exon-sc0002137-1575043694:18339..18477 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1575043694:12558..13324 | TCONS_00039536-exon-sc0002137-1575043694:12558..13324 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1510915933:20985..21147 | TCONS_00039536-exon-sc0002137-1510915933:20985..21147 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1510915933:18339..18477 | TCONS_00039536-exon-sc0002137-1510915933:18339..18477 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1510915933:12558..13324 | TCONS_00039536-exon-sc0002137-1510915933:12558..13324 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1491911889:20985..21147 | TCONS_00039536-exon-sc0002137-1491911889:20985..21147 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1491911889:18339..18477 | TCONS_00039536-exon-sc0002137-1491911889:18339..18477 | Clytia hemisphaerica | exon |
| TCONS_00039536-exon-sc0002137-1491911889:12558..13324 | TCONS_00039536-exon-sc0002137-1491911889:12558..13324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002137 | supercontig | sc0002137:12558..21147 - |
Blast
The following BLAST results are available for this feature:
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