TCONS_00039535 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039535
Unique NameTCONS_00039535
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1021

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039535 ID=TCONS_00039535|Name=TCONS_00039535|organism=Clytia hemisphaerica|type=transcript|length=1021bp
CAGACACCGAGACCACACACAGCGTACACTGGAAAGCTGATTTTGGATTA
ATCAAAAATGGGAATCCTGGAAAAGATTCAAGATCTGTCTCCTACTGCTG
GGAAAAAGTTCACAGATTATGGATTTGCAAACGATTCTATGACTTTGAGG
AACTTGTATTTGACAGTTTAAGTGAGTTCTTTCCcgaaaaaacaatgcaa
aatattaaactcaaatcaaaggTGTGGACCATCATTAGGGGAGGAGAAGT
TAAGATCagattgaaaaatcataaaaaagataACTGTCAATATGGATTTT
AGTTTGATGCCTATTGAATTAATGAAGATGATTGTCTCCTATTTGGACAA
TAAAAGCTGCAGAAATATTGCTCTAACATCAAATGGAATGAGAAACCTTG
TCTTTGAAAAGATCTGGTCGAAACCAAGCTTTCATAAACAAAAAGATATT
GATTTCCTTGGTAATATTTCACATCTGCCGATTCGCGAGTTGAATGTTGg
agatttttcttgttcatgGGTTGAAATTGTTGGAATGATACCTAGCCTTC
AATTGTTACATGTCAATGCTTCTTCAAACAAGCCTTGCGAACCGTTTGAC
ACACAATTGCGTCATTTGAGGGTTCCTATTGTTATTCACACCAGTGCCTT
TAATCTTGGAggagaaaattttgatcatCTTTTGTCAATCCTTGAAGCTA
TTACAGTAAAAGAAATCATCATCGACCATTCTTCGTGGCCGCACGATGGT
TCGCGATGGTCCTATGAGCGCTTCAAGCTACTTGCTGATAACTTTTATAT
ATCTTGTGTTTNTTTTTTTAGACTAAGATTTAAGATACCTTCGCCAATCT
TGGGAATCTCCATTTTTCGATAAGTTATTCGCGCTTTTCGTGACGATCTC
TCTCATGTAAATTTTATGACCACCAGGATTGGCGAAGTTTGTGAAGTTGA
AGCACTCGAAGAATTGGCTTTTTCAATCATCTGCGGTGGAGCTCAAGTTA
TCTGAAATTGGAATCGTCTAA
Run BLAST on NCBI

protein sequence of TCONS_00039535-protein

>TCONS_00039535-protein ID=TCONS_00039535-protein|Name=TCONS_00039535-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MDFSLMPIELMKMIVSYLDNKSCRNIALTSNGMRNLVFEKIWSKPSFHKQ
KDIDFLGNISHLPIRELNVGDFSCSWVEIVGMIPSLQLLHVNASSNKPCE
PFDTQLRHLRVPIVIHTSAFNLGGENFDHLLSILEAITVKEIIIDHSSWP
HDGSRWSYERFKLLADNFYISCVXFFRLRFKIPSPILGISIFR
Run BLAST on NCBI

transcript from alignment at sc0002137:12558..19068-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039535 ID=TCONS_00039535|Name=TCONS_00039535|organism=Clytia hemisphaerica|type=transcript|length=6511bp|location=Sequence derived from alignment at sc0002137:12558..19068- (Clytia hemisphaerica)
CAGACACCGAGACCACACACAGCGTACACTGGAAAGCTGATTTTGGATTA
ATCAAAAATGGGAATCCTGGAAAAGATTCAAGATCTGTCTCCTACTGCTG
GGAAAAAGTTCACAGGTAACTTAAATATTTTTAAAGGAAGCTTTTTTTTG
AAATATTTCATCAAATCAAGCAAAGAATGTCCTTATATCTTTAACTTTTT
CTGCCACAACAAAAGTATGATGGCCATAGCCGCTGGATCCACTGAGTTGG
ATGATCTCTTCAAGCAGGCATGCTAGCTGAGTGGCATTTTTGAATGCAGT
ATCCATTTTAAGTTCAAATAACGTCTATTGACGTTTGTGGGTGGGTGGGT
TAACAGCCAGTGACGTTAGTGACGTTATTTCAACTTTTGCTAAACATCGA
TTTTCAGTAAAATCTTTACCCTTTCAAAACGTCAATTGACGTTATTTGAA
CTTAAAATCGATTTGTGAGAAGTGACCCCTTAGTCGGAGGACAATTTTTT
GGGAGAATAATATCTTTGTTGGTTATTTTGTTTTGCTGTTAAGATTTTAT
TTAAACAAAAAACTGAAAGTTCTTCCCTTGTTCATTTTAAGATTATGGAT
TTGCAAACGATTCTATGACTTTGAGGAACTTGTATTTGACAGTTTAAGTG
AGTTCTTTCCCGAAAAAACAATGCAAAATATTAAACTCAAATCAAAGGTG
TGGACCATCATTAGGGGAGGAGAAGTTAAGGTAAGTGAAAGTGGTTTCTT
ATTCTTGGGGAGAAAAATGGATGACTACTATACTTAAATCAAATTAATTT
TCACAAGATAAAATTTTGTGACTTGGCAAATTTTTGCCATTTTCAAGAAA
TTAAATCTTGCTAAAACATTTAGGATCACTCATTCATAAAATTAAATCCA
CATGAAATTTTTCCAACCCACTAGGCGAAAAAACCAGTCCAAATCCTACA
CTTTTCCCAAAAAAAATTACAATTTCAGGCTTGCTCGCAAAATTAAATAT
ATAAAGATTTTTCCAACATATAGATACAATGAAAATTTCGTGAATTTTTA
TGGTTGCATATTTTAATCTCGCAAAATTTAATCTGATTAAAGTACTTCAA
TCACACCCTTTTTCCATTCTTTTTGTCAAAATTCACTATTCAGGGGAGCC
ATCCAAACTAAAACTTGCCATATGAAAAATATTGGGAGGGTTTGAGTTGC
TTACGTCTAGGTTTTCCAAAGCTTTTCAAAATTTTCACGTTGGGTTCGCT
TCACTGCTAAATAATCTTTGGGCAAAAACTTTTTTATTTATTGGTTTACG
GGCCCGCCAATGTTATTTTTGCTTAAATCAAATAAAAATAAAATAGAGAT
TTCAAAAACCTTTATTTATTTTTTCTCCTCCAACATGCAAAAAAGAGGTA
AGAAATAAAAAAACTTTACTTTAAACAGAAAAGAAGACTTTTCTTTAAAC
AGAAAAGAAGAGAATGAGAGAGAGGGTTTAGATATCGTAATGATATAACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCTTTTTTTTTCATTTCTTTCTTTTTTTATA
ATCTCTTTTATTTAAAATCCTTTCTCTGATTTTACTGTTGAAATTTGAGA
GTAGGTATAAAAAGATGAAAGATAAAAGATGAAAGGCTAATTAAATTGTT
TAACTGAAAACCATTGTTAAAATGAAAGTAGAGAACAAAATTTTTTAAAG
TAATACATTAAAGTCTATTGACAAAAGTGATAATTCAAAGAGAAATTTGA
AGACCATCTATTTTCTTTCTCTTTGTCTGAGATTGTATTAACCATTTCTG
CTATTCTTTTTTAAAAGTCTCTTTCTTTTTCCTATAAAATTGCTATTATA
ACGATTGTTCTTTGTACTGTGTTGAACAGATCAGATTTTTTTTTCAAGAG
AAATTTTTTTCTGCATGTGTGAGAGTTGTTGCATAGAAACTTGTATATTT
TTGAGCTCTGACTGCTCACTTGGCAGCTTGAGATAATTTTATTTTTTTAT
TTCCTCCGATTTTAGATTCTAAAAAAGAAAATAAAAAAAAATAAAAAGGT
TAATTTTATTTTTATTTTTTTTCCATCCTCCTCTCCAAAATTTTACCTCA
AAAAGCCCGTAAACCAGAAAATAAAAAAGTAGTTGCCTTAACGCTTATAA
GCATATGAAGGCTCAGATTTGGTAAATTCTTAAGCATGACATAAGCATAT
AAGCGAGCCTGAAATATAATTGCTTATGGAATCAAAATTTAACATTTTGT
TATTTGATTTCCACAAAAAAGAAAACACTCCATTGCTTTTACATTAATCG
TCTTCTAACAGGAAAATAGAATACATTCCATTGGGTTGGTGTAATTTAAG
ATGCACGATCTAACGATTTACGATTCACGATGCACGATCCATGCATAAAG
TATGCTGATTATTCCGAATAATTATCATAANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTCTTAAAGCAAATAAAAGAATATAT
TGGCTAACAATGTGTTTTGCGGACCATAATGTACGAAGCAAAAAACGGGT
GCTCTATTATGAGAAAAAATTTTCTTTCGGTAAACAATTCCCCTATATTG
ATTCAAGCTATGAAAAAGAGAGAGTACAGAAGGTGAATGCACGTGGCCTT
CACTTAACTGAATTTAAATTGAAAAGAGAATAATTTGTATAATCTTACAT
AAATGATGTTTTTAAAAATAATTGAGTTTCAGCGAATGAAAGTTTGTACA
TTGGCTAAATATTTTATCATGATTAGCACGATTACGCATGAATTAACATA
TTTTATGCACGGATCGCGAATCGTACATCGTAAATCGTTAGATCGTGCAT
CTTAAATTACACCAACCCCATTCCATTGCGTTCAGATTTTCCCGCGATTT
TTTTCCCTTTCGATTTCGAATTATGGCGTTCTATGAATCGAATGTTTACA
AATTATATAGTATATGACGTTAGAAAATTAACAACTCATAAGCATATAGT
AAGCATATACTGAGCCTAGATTCGCTGCGGTCTTAAACATATCTGAGCCT
GAGCAAGGGGCAGACACTTGCTTATAAAAAAAACATGTATTATAGGAACT
ATAATTTTGTGCATTTCTCACTTGAAGTTGAAAGAAAATTAGAGCTGTTA
TTGTGCGGTGGTGTCCGGTGGGCGTCCTGGATGCATGCAAAATTTTGCTT
TGCTTCAATCCTGGAAAGTGATAGAAAATGACCGTCATTCAAATAATTCA
CCTCTCTCTTTCTACTTTCTATCTTTCTTTCTACTTTTGTGTTTTCTAAG
TTTCTGAGACTCATTTTCTGATTTCTGTAGCATCTTTTACAAAAAATCCT
TTTTGTAGGGGGGAATTTTTTTTGCGAAAAATGCCAAAGGGGGGGGGGGC
AAAAGGGGGGTAGTAGTTGTAAACAAAAATAATGGAGGGGGGGTAATTGG
AAAAATTTTCTAAACTTGAGGACCTAATTGCTGGGGTTTTGGAAATTTCA
CTTTTTAAAAAACCTCAAGTAGGGTAAATGTAGGCTAAAATCAGGCTATT
TAAAGCAAAATAAAGGACTTTCCGAAATTTGATAAGCAGGAGAGGGTCCA
GAGGGTTGAAAAATAGAAAAAATAACACTTGGGAGCGGGATGAGCGTTTA
ATTGGTATGCGATTAGACAGAAAGGTCTGTCATGACTAGATAGCCAGGAC
TATCTACCAAGCATTCATGATAAAATTAACATCATTGATTTCAGATCAGA
TTGAAAAATCATAAAAAAGATAACTGTCAATATGGATTTTAGTTTGATGC
CTATTGAATTAATGAAGATGATTGTCTCCTATTTGGACAATAAAAGCTGC
AGAAATATTGCTCTAACATCAAATGGAATGAGAAACCTTGTCTTTGAAAA
GATCTGGTCGAAACCAAGCTTTCATAAACAAAAAGATATTGATTTCCTTG
GTAATATTTCACATCTGCCGATTCGCGAGTTGAATGTTGGAGATTTTTCT
TGTTCATGGGTTGAAATTGTTGGAATGATACCTAGCCTTCAATTGTTACA
TGTCAATGCTTCTTCAAACAAGCCTTGCGAACCGTTTGACACACAATTGC
GTCATTTGAGGGTTCCTATTGTTATTCACACCAGTGCCTTTAATCTTGGA
GGAGAAAATTTTGATCATCTTTTGTCAATCCTTGAAGCTATTACAGTAAA
AGAAATCATCATCGACCATTCTTCGTGGCCGCACGATGGTTCGCGATGGT
CCTATGAGCGCTTCAAGCTACTTGCTGATAACTTTTATATATCTTGTGTT
TNTTTTTTTAGACTAAGATTTAAGATACCTTCGCCAATCTTGGGAATCTC
CATTTTTCGATAAGTTATTCGCGCTTTTCGTGACGATCTCTCTCATGTAA
ATTTTATGACCACCAGGATTGGCGAAGTTTGTGAAGTTGAAGCACTCGAA
GAATTGGCTTTTTCAATCATCTGCGGTGGAGCTCAAGTTATCTGAAATTG
GAATCGTCTAA

Coding sequence (CDS) from alignment at sc0002137:12558..19068-

>TCONS_00039535 ID=TCONS_00039535|Name=TCONS_00039535|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0002137:12558..19068- (Clytia hemisphaerica)
ATGGATTTTAGTTTGATGCCTATTGAATTAATGAAGATGATTGTCTCCTA
TTTGGACAATAAAAGCTGCAGAAATATTGCTCTAACATCAAATGGAATGA
GAAACCTTGTCTTTGAAAAGATCTGGTCGAAACCAAGCTTTCATAAACAA
AAAGATATTGATTTCCTTGGTAATATTTCACATCTGCCGATTCGCGAGTT
GAATGTTGGAGATTTTTCTTGTTCATGGGTTGAAATTGTTGGAATGATAC
CTAGCCTTCAATTGTTACATGTCAATGCTTCTTCAAACAAGCCTTGCGAA
CCGTTTGACACACAATTGCGTCATTTGAGGGTTCCTATTGTTATTCACAC
CAGTGCCTTTAATCTTGGAGGAGAAAATTTTGATCATCTTTTGTCAATCC
TTGAAGCTATTACAGTAAAAGAAATCATCATCGACCATTCTTCGTGGCCG
CACGATGGTTCGCGATGGTCCTATGAGCGCTTCAAGCTACTTGCTGATAA
CTTTTATATATCTTGTGTTTNTTTTTTTAGACTAAGATTTAAGATACCTT
CGCCAATCTTGGGAATCTCCATTTTTCGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023878XLOC_023878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039535-exon-sc0002137-1575043694:18954..19068TCONS_00039535-exon-sc0002137-1575043694:18954..19068Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1575043694:18339..18477TCONS_00039535-exon-sc0002137-1575043694:18339..18477Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1575043694:12558..13324TCONS_00039535-exon-sc0002137-1575043694:12558..13324Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1510915933:18954..19068TCONS_00039535-exon-sc0002137-1510915933:18954..19068Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1510915933:18339..18477TCONS_00039535-exon-sc0002137-1510915933:18339..18477Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1510915933:12558..13324TCONS_00039535-exon-sc0002137-1510915933:12558..13324Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1491911889:18954..19068TCONS_00039535-exon-sc0002137-1491911889:18954..19068Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1491911889:18339..18477TCONS_00039535-exon-sc0002137-1491911889:18339..18477Clytia hemisphaericaexon
TCONS_00039535-exon-sc0002137-1491911889:12558..13324TCONS_00039535-exon-sc0002137-1491911889:12558..13324Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039535-proteinTCONS_00039535-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002137supercontigsc0002137:12558..19068 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.2043	21.7799	10.3827	8.24242	0.318934	3.11462	4.32582	2.29681	0.0530411	1.32158	0	1.55028	0.0818667	0.278052	1.14034	2.01152	0.770145	2.6609	0.971052	0	0.852785	0	22.406	23.3682	2.88613	0.942877	1.808	2.4299	11.1923	16.107
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
IPR001810F-box_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039535 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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