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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039533 ID=TCONS_00039533|Name=TCONS_00039533|organism=Clytia hemisphaerica|type=transcript|length=1829bp
TCCATGGGGCAAATTGTTTCGCTGCTATTTTTCACATCTTTGCCCCAAGT
GCCACTAGGTTCCTAATTGTTTCTACAAAATGTGTCTAAAAGTGGCAAAA
GTGCTTACATTTTTTACCACTTAATTCCAAATGATCGTTTGTGTCCTTTG
AGTTAAAAGTGGTAAATTTACAATCTCCACCaagcaaaaaacaaatttgt
tttgtttcgcGCAGTTTGTGTGAAAAGTGGTAAACAAAATGGCAGCTTTC
GAATGCATAAATTTGATTATAATTTTGCATTAATTTTCCGTCGCTATGTA
ACTAGAGAATAAATTTATTCAAAGATGGCAGAAGGCATCATTTATGTTGT
ACCGATTGAAAATGTAATATAAAGACCTAGAATAAGGCTCTGTTGCCGTC
GGAATTTTACCTAGAAGGACCACTGTTTCGGGCCCGTACTAGAAGGAACG
TGGTCTCGTTTTTACACATTGCCTGACACAAGTTAGCTGAAGGAGCCACT
TTTCacacttttaaaaaatgtttcaacatgATGGTGGCAGAAGTGGGAAC
AagggcaaaagtggcaaaagtgTAAGCGAAACAATTTGCCCCCATGagga
aaatgaaacatttgaaagaattcaATTTCGACTGTGGGTATTTTGAAGAT
GAGAATGCGCCACCAATGGAGTTATTGACAGATTTACCTTTTAAATATCT
TTGTTCGGATCAATTCAACATCTATGGAAAAAGAGATGTCCAAATGATGG
CGTCGACAATTTCCAAAATCAAATCTCTTCAAGGTGATCACAagaattct
tcttttttaagaGAATTTCGCCTCATGCGTAATGTTGTTAGTGATTATTT
ACTCACACCGGACGATTTTAAGTTATTGAAGAATCTACCTCTTACATATG
TTGATTTGCGTGCTTTGGATCTAAAGCAAGACAATATCAAAGATTTCCGT
GAAAtcatgaaacaaatgaaaattcTAGAAATCGAATATTATTATCAGCT
GTTTCCGAGAAGGAAAGACTTCAGAATTGATGTCGAAAAATTTGGGCCTG
GTAGGATTTATAAGACAATCATTGCCATAAATGACGATTGAGTTTTCGAT
TATTCACGTACTGTTCCATTCACATCATTTTTTTGgtattattttaaatt
gttccccTTCTTTGGTATTTTCTGTCATTGTAATGTTATTTTGGTTCCCC
GATATATCTTGCagatattataattttttcaggAACTTTTAAATCAATAT
ATTTTGTTAAGGATTTATATTTGTTACTTCTCGGCAAAATTTTGGGAAGA
CATTAAACTGGGTTATTGGATCGCTCAgagtttcatttttctttttggca
cctTCGGTGACACTGGATTAATGAGTGGCGGGTTGGGCGGCGACAGTAGG
GGGAGGCCTGAGTGTTCAGTTTCGAATTGTCTCCCTTCGTGGCCAAGGCA
ATTAACTTTATCAGATTTTTCAAATACCCAAACTAGTGAAAGTGCTTCTT
AACTTGTAACTCTAAAATAAAAGCTTCATGGTCGAACGCTggagtcaatt
tttttgtaaaaaattaaaatgtttttattgtaaataaacTTGTGTTCATG
GATAAAGCCGTCCCgagtttggaaggatttcccaagtttaagggctctga
ccatagtcagaaaatcgGTTATGTGATTcgaagataaaacttttgtttca
gGTTCCCTGACACTTTAAAGAAAGAACaactatttcaaattgtttgttca
tttattttatcaagagtaattaagaatttaattacaaaaatgacgctatg
aactttaaaaagatgttaataaaaTGTCA Run BLAST on NCBI transcript from alignment at sc0002137:10600..12428- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039533 ID=TCONS_00039533|Name=TCONS_00039533|organism=Clytia hemisphaerica|type=transcript|length=1829bp|location=Sequence derived from alignment at sc0002137:10600..12428- (Clytia hemisphaerica)
TCCATGGGGCAAATTGTTTCGCTGCTATTTTTCACATCTTTGCCCCAAGT
GCCACTAGGTTCCTAATTGTTTCTACAAAATGTGTCTAAAAGTGGCAAAA
GTGCTTACATTTTTTACCACTTAATTCCAAATGATCGTTTGTGTCCTTTG
AGTTAAAAGTGGTAAATTTACAATCTCCACCAAGCAAAAAACAAATTTGT
TTTGTTTCGCGCAGTTTGTGTGAAAAGTGGTAAACAAAATGGCAGCTTTC
GAATGCATAAATTTGATTATAATTTTGCATTAATTTTCCGTCGCTATGTA
ACTAGAGAATAAATTTATTCAAAGATGGCAGAAGGCATCATTTATGTTGT
ACCGATTGAAAATGTAATATAAAGACCTAGAATAAGGCTCTGTTGCCGTC
GGAATTTTACCTAGAAGGACCACTGTTTCGGGCCCGTACTAGAAGGAACG
TGGTCTCGTTTTTACACATTGCCTGACACAAGTTAGCTGAAGGAGCCACT
TTTCACACTTTTAAAAAATGTTTCAACATGATGGTGGCAGAAGTGGGAAC
AAGGGCAAAAGTGGCAAAAGTGTAAGCGAAACAATTTGCCCCCATGAGGA
AAATGAAACATTTGAAAGAATTCAATTTCGACTGTGGGTATTTTGAAGAT
GAGAATGCGCCACCAATGGAGTTATTGACAGATTTACCTTTTAAATATCT
TTGTTCGGATCAATTCAACATCTATGGAAAAAGAGATGTCCAAATGATGG
CGTCGACAATTTCCAAAATCAAATCTCTTCAAGGTGATCACAAGAATTCT
TCTTTTTTAAGAGAATTTCGCCTCATGCGTAATGTTGTTAGTGATTATTT
ACTCACACCGGACGATTTTAAGTTATTGAAGAATCTACCTCTTACATATG
TTGATTTGCGTGCTTTGGATCTAAAGCAAGACAATATCAAAGATTTCCGT
GAAATCATGAAACAAATGAAAATTCTAGAAATCGAATATTATTATCAGCT
GTTTCCGAGAAGGAAAGACTTCAGAATTGATGTCGAAAAATTTGGGCCTG
GTAGGATTTATAAGACAATCATTGCCATAAATGACGATTGAGTTTTCGAT
TATTCACGTACTGTTCCATTCACATCATTTTTTTGGTATTATTTTAAATT
GTTCCCCTTCTTTGGTATTTTCTGTCATTGTAATGTTATTTTGGTTCCCC
GATATATCTTGCAGATATTATAATTTTTTCAGGAACTTTTAAATCAATAT
ATTTTGTTAAGGATTTATATTTGTTACTTCTCGGCAAAATTTTGGGAAGA
CATTAAACTGGGTTATTGGATCGCTCAGAGTTTCATTTTTCTTTTTGGCA
CCTTCGGTGACACTGGATTAATGAGTGGCGGGTTGGGCGGCGACAGTAGG
GGGAGGCCTGAGTGTTCAGTTTCGAATTGTCTCCCTTCGTGGCCAAGGCA
ATTAACTTTATCAGATTTTTCAAATACCCAAACTAGTGAAAGTGCTTCTT
AACTTGTAACTCTAAAATAAAAGCTTCATGGTCGAACGCTGGAGTCAATT
TTTTTGTAAAAAATTAAAATGTTTTTATTGTAAATAAACTTGTGTTCATG
GATAAAGCCGTCCCGAGTTTGGAAGGATTTCCCAAGTTTAAGGGCTCTGA
CCATAGTCAGAAAATCGGTTATGTGATTCGAAGATAAAACTTTTGTTTCA
GGTTCCCTGACACTTTAAAGAAAGAACAACTATTTCAAATTGTTTGTTCA
TTTATTTTATCAAGAGTAATTAAGAATTTAATTACAAAAATGACGCTATG
AACTTTAAAAAGATGTTAATAAAATGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039533-exon-sc0002137-1575043694:10600..12428 | TCONS_00039533-exon-sc0002137-1575043694:10600..12428 | Clytia hemisphaerica | exon |
| TCONS_00039533-exon-sc0002137-1510915933:10600..12428 | TCONS_00039533-exon-sc0002137-1510915933:10600..12428 | Clytia hemisphaerica | exon |
| TCONS_00039533-exon-sc0002137-1491911889:10600..12428 | TCONS_00039533-exon-sc0002137-1491911889:10600..12428 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002137 | supercontig | sc0002137:10600..12428 - |
Blast
The following BLAST results are available for this feature:
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