TCONS_00039530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039530
Unique NameTCONS_00039530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039530 ID=TCONS_00039530|Name=TCONS_00039530|organism=Clytia hemisphaerica|type=transcript|length=2170bp
TCCATGGGGCAAATTGTTTCGCTGCTATTTTTCACATCTTTGCCCCAAGT
GCCACTAGGTTCCTAATTGTTTCTACAAAATGTGTCTAAAAGTGGCAAAA
GTGCTTACATTTTTTACCACTTAATTCCAAATGATCGTTTGTGTCCTTTG
AGTTAAAAGTGGTAAATTTACAATCTCCACCaagcaaaaaacaaatttgt
tttgtttcgcGCAGTTTGTGTGAAAAGTGGTAAACAAAATGGCAGCTTTC
GAATGCATAAATTTGATTATAATTTTGCATTAATTTTCCGTCGCTATGTA
ACTAGAGAATAAATTTATTCAAAGATGGCAGAAGGCATCATTTATGTTGT
ACCGATTGAAAATGTAATATAAAGACCTAGAATAAGGCTCTGTTGCCGTC
GGAATTTTACCTAGAAGGACCACTGTTTCGGGCCCGTACTAGAAGGAACG
TGGTCTCGTTTTTACACATTGCCTGACACAAGTTAGCTGAAGGAGCCACT
TTTCacacttttaaaaaatgtttcaacatgATGGTGGCAGAAGTGGGAAC
AagggcaaaagtggcaaaagtgTAAGCGAAACAATTTGCCCCCATGagga
aaatgaaacatttgaaagaattcaATTTCGACTGTGGGTATTTTGAAGAT
GAGAATGCGCCACCAATGGAGTTATTGACAGATTTACCTTTTAAATATCT
TTGTTCGGATCAATTCAACATCTATGGAAAAAGAGATGTCCAAATGATGG
CGTCGACAATTTCCAAAATCAAATCTCTTCAAGGTGATCACAagaattct
tcttttttaagaGAATTTCGCCTCATGCGTAATGTTGTTAGTGATTATTT
ACTCACACCGGACGATTTTAAGTTATTGAAGAATCTACCTCTTACATATG
TTGATTTGCGTGCTTTGGATCTAAAGCAAGACAATATCAAAGATTTCCGT
GAAAtcatgaaacaaatgaaaattcTAGAAATCGAATATTATTATCAGCT
GTTTCCGAGAAGGAAAGACTTCAGAATTGATGTCGAAAAATTTGGGCCTG
GTAGGATTTATAAGACAATCATTGCCATAAATGACGATTGAGTTTTCGAT
TATTCACGTACTGTTCCATTCACATCATTTTTTTGgtaaaaaaatactta
caaaacaATGTCAAGTGATACAATAGATTTcaattcatttccaaatgaac
tCATTCAGACGATCATATTATTTTTTGATATGGAAGATGCAAAGAATATG
GCGTTAACTTCAAAGGAAATGCATTCATTAACATTACCGAGACTGTGGCG
ACATCCTTACTATACCAAATTGAAAGATGtctattttcttgaaaaaatct
ctCATTTTCCGATTGGTGTTTTGCACACAAAAGATTTCGAGTGTACCTGC
TTAGAATTGGGGCTCTAGTCCCACAACTCACTCTCTTACATGTTGATAAA
CTCGAATTTGGTGGTGCTGTCATGAATGTTTTCAAGTCCAGATTACCGTT
TGTGAAGAAAATACCATTGCTTGCTCATACATCTGCTTTTAATATTAAGG
AGATAGAAGATATTCAAAAGTTCTTTGAAATTCTGAAGTCTGTCAATGTG
AAGTCCCTTATTATTGATCACAAAATGTTTCGATATATTGATTCACTATC
AACGGCTCAGTGGTCTATCGAGCAATTTAAAATGTTTGCAGAGAATTTCA
AAATTGATGCACTTTCTATCGATAGTCTTGCGATAAGCGCTGGGAATGTC
AAAGAATTCATTCATACCATCGCAACCATTGAAAACCTCGTTGAAAATTG
TCGCATTTTTTCCAGAACCTGAAGGTTCCTATAGATTCACTATTGACGAT
CTTGAATTAATGATCGAACTGGATCTATGGATCATCAAAATTGAGAGCAA
ATCTTTGAAGGTAAATAATGACACTTCAGAGCTTTTGAATTTTGTAGAAG
TCATTAGATATATGGATTACTTAAAGGAATTTAGCTTAAGTTTTGGTCAC
TATGAGAGGGTAAACGTAGCTACAATGAATCTTTTAGTTGACCTTCCAAT
TAAATTCATACTGTAACGTCCTGCCATTTTCTCTTTGAGAAAGAAAACAT
CAGGGAAATTGTAAACACATCATCGAAAATTGAAACGTTAGTTGAATTTC
CTTTTATTCAAAATAAGGAA
Run BLAST on NCBI

transcript from alignment at sc0002137:8908..12428-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039530 ID=TCONS_00039530|Name=TCONS_00039530|organism=Clytia hemisphaerica|type=transcript|length=3521bp|location=Sequence derived from alignment at sc0002137:8908..12428- (Clytia hemisphaerica)
TCCATGGGGCAAATTGTTTCGCTGCTATTTTTCACATCTTTGCCCCAAGT
GCCACTAGGTTCCTAATTGTTTCTACAAAATGTGTCTAAAAGTGGCAAAA
GTGCTTACATTTTTTACCACTTAATTCCAAATGATCGTTTGTGTCCTTTG
AGTTAAAAGTGGTAAATTTACAATCTCCACCAAGCAAAAAACAAATTTGT
TTTGTTTCGCGCAGTTTGTGTGAAAAGTGGTAAACAAAATGGCAGCTTTC
GAATGCATAAATTTGATTATAATTTTGCATTAATTTTCCGTCGCTATGTA
ACTAGAGAATAAATTTATTCAAAGATGGCAGAAGGCATCATTTATGTTGT
ACCGATTGAAAATGTAATATAAAGACCTAGAATAAGGCTCTGTTGCCGTC
GGAATTTTACCTAGAAGGACCACTGTTTCGGGCCCGTACTAGAAGGAACG
TGGTCTCGTTTTTACACATTGCCTGACACAAGTTAGCTGAAGGAGCCACT
TTTCACACTTTTAAAAAATGTTTCAACATGATGGTGGCAGAAGTGGGAAC
AAGGGCAAAAGTGGCAAAAGTGTAAGCGAAACAATTTGCCCCCATGAGGA
AAATGAAACATTTGAAAGAATTCAATTTCGACTGTGGGTATTTTGAAGAT
GAGAATGCGCCACCAATGGAGTTATTGACAGATTTACCTTTTAAATATCT
TTGTTCGGATCAATTCAACATCTATGGAAAAAGAGATGTCCAAATGATGG
CGTCGACAATTTCCAAAATCAAATCTCTTCAAGGTGATCACAAGAATTCT
TCTTTTTTAAGAGAATTTCGCCTCATGCGTAATGTTGTTAGTGATTATTT
ACTCACACCGGACGATTTTAAGTTATTGAAGAATCTACCTCTTACATATG
TTGATTTGCGTGCTTTGGATCTAAAGCAAGACAATATCAAAGATTTCCGT
GAAATCATGAAACAAATGAAAATTCTAGAAATCGAATATTATTATCAGCT
GTTTCCGAGAAGGAAAGACTTCAGAATTGATGTCGAAAAATTTGGGCCTG
GTAGGATTTATAAGACAATCATTGCCATAAATGACGATTGAGTTTTCGAT
TATTCACGTACTGTTCCATTCACATCATTTTTTTGGTATTATTTTAAATT
GTTCCCCTTCTTTGGTATTTTCTGTCATTGTAATGTTATTTTGGTTCCCC
GATATATCTTGCAGATATTATAATTTTTTCAGGAACTTTTAAATCAATAT
ATTTTGTTAAGGATTTATATTTGTTACTTCTCGGCAAAATTTTGGGAAGA
CATTAAACTGGGTTATTGGATCGCTCAGAGTTTCATTTTTCTTTTTGGCA
CCTTCGGTGACACTGGATTAATGAGTGGCGGGTTGGGCGGCGACAGTAGG
GGGAGGCCTGAGTGTTCAGTTTCGAATTGTCTCCCTTCGTGGCCAAGGCA
ATTAACTTTATCAGATTTTTCAAATACCCAAACTAGTGAAAGTGCTTCTT
AACTTGTAACTCTAAAATAAAAGCTTCATGGTCGAACGCTGGAGTCAATT
TTTTTGTAAAAAATTAAAATGTTTTTATTGTAAATAAACTTGTGTTCATG
GATAAAGCCGTCCCGAGTTTGGAAGGATTTCCCAAGTTTAAGGGCTCTGA
CCATAGTCAGAAAATCGGTTATGTGATTCGAAGATAAAACTTTTGTTTCA
GGTTCCCTGACACTTTAAAGAAAGAACAACTATTTCAAATTGTTTGTTCA
TTTATTTTATCAAGAGTAATTAAGAATTTAATTACAAAAATGACGCTATG
AACTTTAAAAAGATGTTAATAAAATGTCATAATACCCTCTTTTACAAAAA
ATGCTAAGTTTCAATGGGTAATTAACCTTTTTGTTTCGAATTTGTTTCAA
ATTGTCCGCAATGAATTGAACTATTTGAATTTTTTCGGAAAATTTTCTAA
ATTGATGTGTCAAAAGTTATGAGTATATTTGTGTGAAAAATTTGGAGAAA
AAATTGGGGAAAAACCACTATTTTCGAGATTTTAAGACGAAGAAGCTTTT
ACAAAAATTTCCCGAAAATTTATTTTTAGTATGGCTAAAGATACACCATC
TACCGCAAAAAGTTTTTTAAAATACTTTTTCTTCACCGAAACTTAGCTCT
CCAAAGTTGAAATACTCTTCTTCGCAAAAGTCTTCATTTTCTTCTTCATT
AATTATTTTCATTGAAATTTTTAAATTTGCAGAATCTGGAATAGTTTGTT
TAACAGAAAATGTATAACATGTCATAGTTTTGATGGCTTTATCAAGCAGA
AATTGATGCTTTGTGAATGGTAATTTGAAAAATTGACTATGGTCAGAGCC
CTTAAAGCAGTTGACGGCACAGACCTTTTAGTTCACAAACTTCTGCTCCA
CCAACTACCCATTGTTTTGTTCAAATTGTTTGACTTTGAGGTGTTACTGT
TTGAGCTTTACTTAAAAATGTATCTCTATTTTTCAGGTAAAAAAATACTT
ACAAAACAATGTCAAGTGATACAATAGATTTCAATTCATTTCCAAATGAA
CTCATTCAGACGATCATATTATTTTTTGATATGGAAGATGCAAAGAATAT
GGCGTTAACTTCAAAGGAAATGCATTCATTAACATTACCGAGACTGTGGC
GACATCCTTACTATACCAAATTGAAAGATGTCTATTTTCTTGAAAAAATC
TCTCATTTTCCGATTGGTGTTTTGCACACAAAAGATTTCGAGTGTACCTG
CTTAGAATTGGGGCTCTAGTCCCACAACTCACTCTCTTACATGTTGATAA
ACTCGAATTTGGTGGTGCTGTCATGAATGTTTTCAAGTCCAGATTACCGT
TTGTGAAGAAAATACCATTGCTTGCTCATACATCTGCTTTTAATATTAAG
GAGATAGAAGATATTCAAAAGTTCTTTGAAATTCTGAAGTCTGTCAATGT
GAAGTCCCTTATTATTGATCACAAAATGTTTCGATATATTGATTCACTAT
CAACGGCTCAGTGGTCTATCGAGCAATTTAAAATGTTTGCAGAGAATTTC
AAAATTGATGCACTTTCTATCGATAGTCTTGCGATAAGCGCTGGGAATGT
CAAAGAATTCATTCATACCATCGCAACCATTGAAAACCTCGTTGAAAATT
GTCGCATTTTTTCCAGAACCTGAAGGTTCCTATAGATTCACTATTGACGA
TCTTGAATTAATGATCGAACTGGATCTATGGATCATCAAAATTGAGAGCA
AATCTTTGAAGGTAAATAATGACACTTCAGAGCTTTTGAATTTTGTAGAA
GTCATTAGATATATGGATTACTTAAAGGAATTTAGCTTAAGTTTTGGTCA
CTATGAGAGGGTAAACGTAGCTACAATGAATCTTTTAGTTGACCTTCCAA
TTAAATTCATACTGTAACGTCCTGCCATTTTCTCTTTGAGAAAGAAAACA
TCAGGGAAATTGTAAACACATCATCGAAAATTGAAACGTTAGTTGAATTT
CCTTTTATTCAAAATAAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023878XLOC_023878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039530-exon-sc0002137-1575043694:11294..12428TCONS_00039530-exon-sc0002137-1575043694:11294..12428Clytia hemisphaericaexon
TCONS_00039530-exon-sc0002137-1575043694:8908..9942TCONS_00039530-exon-sc0002137-1575043694:8908..9942Clytia hemisphaericaexon
TCONS_00039530-exon-sc0002137-1510915933:11294..12428TCONS_00039530-exon-sc0002137-1510915933:11294..12428Clytia hemisphaericaexon
TCONS_00039530-exon-sc0002137-1510915933:8908..9942TCONS_00039530-exon-sc0002137-1510915933:8908..9942Clytia hemisphaericaexon
TCONS_00039530-exon-sc0002137-1491911889:11294..12428TCONS_00039530-exon-sc0002137-1491911889:11294..12428Clytia hemisphaericaexon
TCONS_00039530-exon-sc0002137-1491911889:8908..9942TCONS_00039530-exon-sc0002137-1491911889:8908..9942Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002137supercontigsc0002137:8908..12428 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.99669	8.48823	5.08044	3.81367	5.37503	4.76446	5.10276	5.71013	2.60202	2.83861	4.47028	2.93042	2.19889	1.22872	0.885811	1.09027	0.79486	1.23164	0.49219	0.646257	1.93333	1.9319	9.1044	8.96353	1.78901	2.69983	1.86158	2.30307	5.96311	6.89862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top