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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039526 ID=TCONS_00039526|Name=TCONS_00039526|organism=Clytia hemisphaerica|type=transcript|length=695bp
ggcaaaatcgactaaaaatgttgtatttttttccaagttttagatgaaaa
aataatgttttcctaGCAAAACTTGCTTGATGGCAATGGATTTTAGATTT
GGTTAGTTACCATCATACTGCCCAATAACCTAGATCCATGAATTATTTTG
TaccttcacgtggttggtaTACAATGAGAATTAGCTTAAAATTTGTCTGA
ATTTGTCACGTACAAGGCTCAATATCTTTGTAAACACCAACAAATTCTGC
TAATAAGATGGATGAGTGGAAACTATATTTAACTCAATGGAAACAACAAT
GGAATAATTCTATCAAATTGATTATGTGCATTATGTGTACCTAATAATTT
GTTTCTATCTTGGATgtttttggattcaaatttttccCTGTAAACTGAAT
ATCAATTTGTATTATGTAAATCCTCTCTGGaaagtacatcttgatttgat
tttgatatgtaatGGCTGTAATTGCCAATGAAAATGAGTTCCTATGTGTA
TATAATGTATGTAGTatatatgaaatttattttttaatggcaACTGAATT
TCGATACTAAAACATGCTGCATTATGTAcaaatcagttttttttctgatg
acATTGCTGATGTCATGGTTTGTTTGCAGTTGGATTGAGGGCTTTTTATC
CCTGTTTTACCAGGTTTTCCTGCTTGATTACGCAAATAGTCCCAN Run BLAST on NCBI transcript from alignment at sc0002135:25175..26917- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039526 ID=TCONS_00039526|Name=TCONS_00039526|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at sc0002135:25175..26917- (Clytia hemisphaerica)
GGCAAAATCGACTAAAAATGTTGTATTTTTTTCCAAGTTTTAGATGAAAA
AATAATGTTTTCCTAGCAAAACTTGCTTGATGGCAATGGATTTTAGATTT
GGTAAGTACACGCTAAATTATCCTTGATTGTTGATGCCTTTTTACCTTAC
CTTCTACTGAGGAAAACCATTTTTTTGGGATTGAAATTTCAAGTTTTTGT
AACAGAGGAAATTGCAATCAGGCTCTAATATTTTTACTTTATGTAATTTA
AAAAACTATGATTCTGAAAGGGCGATGACTCTGACCGGTTAGTAGATTGG
CTCTGACCGGTTAGTAGATTGGCTCTGACCGGTAAATAGATTGGATTGGC
TCATGAAGTATTGACCATTATCCAGTTATATATAAGATTTATTTCACTGG
TTGTTGTCAGTGGTCGGTGGAGATAAGATTTGTTGTTTGTGTTCTGTATA
GACCTTTTTTCAAAGAGGACGTCCTGTTGAATAATTATGTAATCCAGCTA
TAAAAACTATGATAGAGCCATACTGTACAGGTATATGTACCGCAAAACCC
ACACTACATTTCTGACCTAAATAATTATTTTTTGGGCTGCCTTTATCAAG
AAAATTGTTTGATGGTGTGAGGAGTCCCATGAAAAGAGTTCTTCCTGATA
TTTCTCAATGTTATATGTTATATTATTTTTATATCATTGCTTTTTAAAAT
TTTCACTTTTTTTGAATACGTATATACCTCAAAACCCACATTTATATTAT
TGACAATATCTTTAAGTCCACTGGGTCAATCAAGGTAAAAATTTGCACCT
GTACATCTAGGTAAGTTTGTTGTAGAACTANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGTCTGT
GGTCGGTGGAATTAAGATTTGTTGTTTGTGTTCTGTATTTGTTCATGAGA
GCTTGCTGCAAAAATCCTAATTCCCATTTTCATTATTATATCCTTTCAGG
TTAGTTACCATCATACTGCCCAATAACCTAGATCCATGAATTATTTTGTA
CCTTCACGTGGTTGGTATACAATGAGAATTAGCTTAAAATTTGTCTGAAT
TTGTCACGTACAAGGCTCAATATCTTTGTAAACACCAACAAATTCTGCTA
ATAAGATGGATGAGTGGAAACTATATTTAACTCAATGGAAACAACAATGG
AATAATTCTATCAAATTGATTATGTGCATTATGTGTACCTAATAATTTGT
TTCTATCTTGGATGTTTTTGGATTCAAATTTTTCCCTGTAAACTGAATAT
CAATTTGTATTATGTAAATCCTCTCTGGAAAGTACATCTTGATTTGATTT
TGATATGTAATGGCTGTAATTGCCAATGAAAATGAGTTCCTATGTGTATA
TAATGTATGTAGTATATATGAAATTTATTTTTTAATGGCAACTGAATTTC
GATACTAAAACATGCTGCATTATGTACAAATCAGTTTTTTTTCTGATGAC
ATTGCTGATGTCATGGTTTGTTTGCAGTTGGATTGAGGGCTTTTTATCCC
TGTTTTACCAGGTTTTCCTGCTTGATTACGCAAATAGTCCCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039526-exon-sc0002135-1575043694:26817..26917 | TCONS_00039526-exon-sc0002135-1575043694:26817..26917 | Clytia hemisphaerica | exon |
| TCONS_00039526-exon-sc0002135-1575043694:25175..25768 | TCONS_00039526-exon-sc0002135-1575043694:25175..25768 | Clytia hemisphaerica | exon |
| TCONS_00039526-exon-sc0002135-1510915933:26817..26917 | TCONS_00039526-exon-sc0002135-1510915933:26817..26917 | Clytia hemisphaerica | exon |
| TCONS_00039526-exon-sc0002135-1510915933:25175..25768 | TCONS_00039526-exon-sc0002135-1510915933:25175..25768 | Clytia hemisphaerica | exon |
| TCONS_00039526-exon-sc0002135-1491911889:26817..26917 | TCONS_00039526-exon-sc0002135-1491911889:26817..26917 | Clytia hemisphaerica | exon |
| TCONS_00039526-exon-sc0002135-1491911889:25175..25768 | TCONS_00039526-exon-sc0002135-1491911889:25175..25768 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002135 | supercontig | sc0002135:25175..26917 - |
Blast
The following BLAST results are available for this feature:
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