TCONS_00039519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039519
Unique NameTCONS_00039519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039519 ID=TCONS_00039519|Name=TCONS_00039519|organism=Clytia hemisphaerica|type=transcript|length=677bp
TCTAAACCGGTCGTCTTTACATTActgtatttcattttcagtaacgGGTT
TGTTACAGATCTTCTTGAGCTAGAGTTTAGTCCGAGGACTTCCTCTAACC
TTATATATCCAGCTGCCAacattttgtaacttttttttctcctttGCCTT
ACTATGCCATTCTTTGATAGTTTCGCGTTCTTTCTTTGAGAAATCGTCAG
TTACTCTAAATTCGTCTTTGTCTAGCTTGTGGACTGATGCCAGAATCTGA
AGTTTCTCTTCTTCGTTCCTTAGTACGANAGTCCGAGGACTTCCTCTAAC
CTTATATATCCAGCTGCCAACATTTTGTAACTTTGTTTTCTGCTTTGCCT
TCCTATGCCATTCTTTGATAGTTTCGCGTTCTTTCTTCGAGAAATCGTCA
GTTACTCTAAATTCGTCTTTGTCTAGCTTGTGGACTGATGCCAGAATCTG
AAGTTTCTCTTCTTCGTTCCTTAGTACGACTTTCAAGGATCGCCATCGTT
TTGTCTTAAACATCATCGTCCTGCGCTGACGATGTTTACCTTTAATCCCA
TTTGGTTTCTCACAATTTCATCAACATATTCTTTATCACCTACCCGTTGT
TCTTCTCTTCATGTTTATTCTCAGCAAGGCTGTGAACAATGATATTGCAC
TTTGTTAAGTTTAACCAtcgttcttct
Run BLAST on NCBI

protein sequence of TCONS_00039519-protein

>TCONS_00039519-protein ID=TCONS_00039519-protein|Name=TCONS_00039519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MMFKTKRWRSLKVVLRNEEEKLQILASVHKLDKDEFRVTDDFSKKERETI
KEWHRKAKQKTKLQNVGSWIYKVRGSPRTXVLRNEEEKLQILASVHKLDK
DEFRVTDDFSKKERETIKEWHSKAKEKKKLQNVGSWIYKVRGSPRTKL
Run BLAST on NCBI

transcript from alignment at sc0002133:20618..21294

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039519 ID=TCONS_00039519|Name=TCONS_00039519|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at sc0002133:20618..21294 (Clytia hemisphaerica)
agaagaacgaTGGTTAAACTTAACAAAGTGCAATATCATTGTTCACAGCC
TTGCTGAGAATAAACATGAAGAGAAGAACAACGGGTAGGTGATAAAGAAT
ATGTTGATGAAATTGTGAGAAACCAAATGGGATTAAAGGTAAACATCGTC
AGCGCAGGACGATGATGTTTAAGACAAAACGATGGCGATCCTTGAAAGTC
GTACTAAGGAACGAAGAAGAGAAACTTCAGATTCTGGCATCAGTCCACAA
GCTAGACAAAGACGAATTTAGAGTAACTGACGATTTCTCGAAGAAAGAAC
GCGAAACTATCAAAGAATGGCATAGGAAGGCAAAGCAGAAAACAAAGTTA
CAAAATGTTGGCAGCTGGATATATAAGGTTAGAGGAAGTCCTCGGACTNT
CGTACTAAGGAACGAAGAAGAGAAACTTCAGATTCTGGCATCAGTCCACA
AGCTAGACAAAGACGAATTTAGAGTAACTGACGATTTCTCAAAGAAAGAA
CGCGAAACTATCAAAGAATGGCATAGTAAGGCaaaggagaaaaaaaagtt
acaaaatgtTGGCAGCTGGATATATAAGGTTAGAGGAAGTCCTCGGACTA
AACTCTAGCTCAAGAAGATCTGTAACAAACCcgttactgaaaatgaaata
cagTAATGTAAAGACGACCGGTTTAGA

Coding sequence (CDS) from alignment at sc0002133:20618..21294

>TCONS_00039519 ID=TCONS_00039519|Name=TCONS_00039519|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0002133:20618..21294 (Clytia hemisphaerica)
ATGATGTTTAAGACAAAACGATGGCGATCCTTGAAAGTCGTACTAAGGAA
CGAAGAAGAGAAACTTCAGATTCTGGCATCAGTCCACAAGCTAGACAAAG
ACGAATTTAGAGTAACTGACGATTTCTCGAAGAAAGAACGCGAAACTATC
AAAGAATGGCATAGGAAGGCAAAGCAGAAAACAAAGTTACAAAATGTTGG
CAGCTGGATATATAAGGTTAGAGGAAGTCCTCGGACTNTCGTACTAAGGA
ACGAAGAAGAGAAACTTCAGATTCTGGCATCAGTCCACAAGCTAGACAAA
GACGAATTTAGAGTAACTGACGATTTCTCAAAGAAAGAACGCGAAACTAT
CAAAGAATGGCATAGTAAGGCaaaggagaaaaaaaagttacaaaatgtTG
GCAGCTGGATATATAAGGTTAGAGGAAGTCCTCGGACTAAACTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023869XLOC_023869Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039519-proteinTCONS_00039519-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039519-exon-sc0002133-1491911889:20618..21294TCONS_00039519-exon-sc0002133-1491911889:20618..21294Clytia hemisphaericaexon
TCONS_00039519-exon-sc0002133-1510915933:20618..21294TCONS_00039519-exon-sc0002133-1510915933:20618..21294Clytia hemisphaericaexon
TCONS_00039519-exon-sc0002133-1575043694:20618..21294TCONS_00039519-exon-sc0002133-1575043694:20618..21294Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002133supercontigsc0002133:20618..21294 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0758071	0	0	0.0916724	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.079022	0.0874921	0.0798964	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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