TCONS_00039506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039506
Unique NameTCONS_00039506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1096

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039506 ID=TCONS_00039506|Name=TCONS_00039506|organism=Clytia hemisphaerica|type=transcript|length=1096bp
CGAATCagcttttcagaatttttcgcCGAATTAACTTTCGTGAGAATTGC
AATCATGTTAATATATTTGGCGGATAGATCAAGGGAAAGTTTGTTGTAAA
CCACTCAATGTTGAAATTGTTATCTTTCTCGTCTAGATTTATCTcctaat
aaattaaaaatgtcTGCCGAACTCACCGACCAAGAGACGATCGAGGCTCA
GGAAGCAGAGATTTCAAGCCTAAAGGCTCAATTAGCCGagttGAAAGCAA
AGAAAACAAAGACCCATTCCGTGGAGCAATGCATCGGGCAGAGTTCATGC
ACACATTTATGCTAAAGAACAGGATCCTGACGAAACAAGCTGGAATCTTG
AGAAATGCTTTGACAGGGACGAGAACATCGGATTTGTTACTGACATGATT
GCGAAGATTGCCCAAATTGATCCAAACGATACTGATGTTATCAGAGTTGC
TTGCCGCAGATATTTCAACCATCAAAAACGGGATAAGAGGAAGAAAGATA
CAATGACTCCAGAACAGCTACAGAGTGATATCAAGCTGAATCGATCATCT
TCAAGAAGAACCAAGACATACCAAAGAAGACGCAAAATTGGCTTCCAGAT
GGATTTGGAGGGGGAAGAGCTAGAGCTCTTCAATCTCATCAAAGGTGGAG
AACTAATGACCGATGAGGAGTCAGAGTATGAAGACGGAGTTGAGACCGGG
CGTCTTATTGTAAGAAAACTGGCTTGGCGTAGCCAAAAGCTCGATGATTT
GATCATCAAAATCGATACTGAAAATCCCTTAAAGGCTGTGAAAGGGCGAA
TTGTTGGAGAACTGTCACAGCACGAGCCACCAATTGGCGTTGACGAAAGA
TTAATCGACATAATGCCTGTGgacgaaatttaatttttttatgtatAATT
TAATGCATGTATATTTTGTGTGTATATTTGGAAGCTTGATATTGTTGCTC
ATACTTTAGAATATTGATATCGTATAGATTTATTTTGCTTTGAATTACAG
TTATCTTATTCAAACATATCTGTTTGGATAATGAATATTCAAAATTTACT
TAGTTCTCAGTCTTCTTGTTCTAGTAATTTCCTTACTTTAACTAAC
Run BLAST on NCBI

protein sequence of TCONS_00039506-protein

>TCONS_00039506-protein ID=TCONS_00039506-protein|Name=TCONS_00039506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MIAKIAQIDPNDTDVIRVACRRYFNHQKRDKRKKDTMTPEQLQSDIKLNR
SSSRRTKTYQRRRKIGFQMDLEGEELELFNLIKGGELMTDEESEYEDGVE
TGRLIVRKLAWRSQKLDDLIIKIDTENPLKAVKGRIVGELSQHEPPIGVD
ERLIDIMPVDEI
Run BLAST on NCBI

transcript from alignment at sc0002131:2923..5070+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039506 ID=TCONS_00039506|Name=TCONS_00039506|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at sc0002131:2923..5070+ (Clytia hemisphaerica)
CGAATCagcttttcagaatttttcgcCGAATTAACTTTCGTGAGAATTGC
AATCATGTTAATATATTTGGCGGATAGATCAAGGGAAAGTTTGTTGTAAA
CCACTCAATGTTGAAATTGTTATCTTTCTCGTCTAGATTTATCTcctaat
aaattaaaaatgtcTGCCGAACTCACCGACCAAGAGACGATCGAGGCTCA
GGAAGCAGAGATTTCAAGCCTAAAGGCTCAATTAGCCGGTGAGTATTTTT
ATTTACGGCTGTGCAAGtcaaaagaagatttttgcaaGATTTGCAATCAA
CTAAATTTTACAATATTATTTGAAACATTTGCATCTCTACAGAAAGgata
atttaatttgtttttatttttcagagttGAAAGCAAAGAAAACAAAGACC
CATTCCGTGGAGCAATGCATCGGTAAGTGAAACTTATTCCAACAGACTTA
CAGGTATTTTATTGAACAGGGGCAATAAATTTGATTGCAATAGTAATTTG
AGCTTATTGAGTACtgaaattttgtctttgttCTTCCTTCTCTTACAGAA
TTTAAAAGActtaactcaaaattttaatttaataacATTTATTGAAATGT
CTTAAGTTTTATTATTGCACATGTTTGACTTTTTAGGGCAGAGTTCATGC
ACACATTTATGCTAAAGAACAGGATCCTGACGAAACAAGCTGGAATCTTG
AGAAATGCTTTGACAGGGACGAGAACATCGGATTTGTTACTGACATGATT
GCGAAGATTGCCCAAATTGATCCAAACGATACTGATGTTATCAGAGGTAA
GTTCATCAAACGAGGTCAATGCTTCACAAACATTCCCTTATAATTAATGT
GGAAAAAGTATTGGACTGTATCATCTTTTGCAAAATATACTGTTCACGGC
AATGCCTTTTGATCtactttaaaattaaattaattttacTAATAAAGCCT
GTAACCTACTGTAACTAGATCACTTTCATCCTGATCTTATCATACAAAAT
GTGGATAAATTGCACAGATCTGTAAAGACCATAAAGGcttagataggcaa
ctttaggCTTTCTCCAGTagaaaaaatgaagagaaaatttgacttttaaa
ttttgtgctgatggataggatctagcattttaattgtttttggagcacaa
gatcaaaaaagtaaaattgcttgttgtcaacttgcttcactttttgatag
aGCCGCAGATCGTTAAAGTTGTTATTCTCTGCTCTTTTNTGtcaacttgc
ttcactttttgatagaGCCGCAGATCGTTAAAGTTGTTATTCTCTGCTCT
TTTAGTTGCTTGCCGCAGATATTTCAACCATCAAAAACGGGATAAGAGGA
AGAAAGATACAATGACTCCAGAACAGCTACAGAGTGATATCAAGCTGAAT
CGATCATCTTCAAGAAGAACCAAGGtttgttttcttattattaattTGAT
GTGATTATTTGTAGTGACAGTAttcattgttattttttaaCAAGTTCCCC
CTCTCCCACTATAATAAAGAAATGAAAGGAATTCTCAATGTTAAAGATGT
AAACGATAATTTTTAGTTCTCaatcaatttaatttctttcaaaCTCTTTT
AATTTTATGTGTTTCAGACATACCAAAGAAGACGCAAAATTGGCTTCCAG
ATGGATTTGGAGGGGGAAGAGCTAGAGCTCTTCAATCTCATCAAAGGTGG
AGAACTAATGACCGATGAGGAGTCAGAGTATGAAGACGGAGTTGAGACCG
GGCGTCTTATTGTAAGAAAACTGGCTTGGCGTAGCCAAAAGCTCGATGAT
TTGATCATCAAAATCGATACTGAAAATCCCTTAAAGGCTGTGAAAGGGCG
AATTGTTGGAGAACTGTCACAGCACGAGCCACCAATTGGCGTTGACGAAA
GATTAATCGACATAATGCCTGTGgacgaaatttaatttttttatgtatAA
TTTAATGCATGTATATTTTGTGTGTATATTTGGAAGCTTGATATTGTTGC
TCATACTTTAGAATATTGATATCGTATAGATTTATTTTGCTTTGAATTAC
AGTTATCTTATTCAAACATATCTGTTTGGATAATGAATATTCAAAATTTA
CTTAGTTCTCAGTCTTCTTGTTCTAGTAATTTCCTTACTTTAACTAAC

Coding sequence (CDS) from alignment at sc0002131:2923..5070+

>TCONS_00039506 ID=TCONS_00039506|Name=TCONS_00039506|organism=Clytia hemisphaerica|type=CDS|length=1467bp|location=Sequence derived from alignment at sc0002131:2923..5070+ (Clytia hemisphaerica)
ATGATTGCGAAGATTGCCCAAATTGATCCAAACGATACTGATGTTATCAG
AGTTGCTTGCCGCAGATATTTCAACCATCAAAAACGGGATAAGAGGAAGA
AAGATACAATGACTCCAGAACAGCTACAGAGTGATATCAAGCTGAATCGA
TCATCTTCAAGAAGAACCAAGACATACCAAAGAAGACGCAAAATTGGCTT
CCAGATGGATTTGGAGGGGGAAGAGCTAGAGCTCTTCAATCTCATCAAAG
GTGGAGAACTAATGACCGATGAGGAGTCAGAGTATGAAGACGGAGTTGAG
ACCGGGCGTCTTATTGTAAGAAAACTGGCTTGGCGTAGCCAAAAGCTCGA
TGATTTGATCATCAAAATCGATACTGAAAATCCCTTAAAGGCTGTGAAAG
GGCGAATTGTTGGAGAACTGTCACAGCACGAGCCACCAATTGGCGTTGAC
GAAAGATTAATCGACATAATGCCTGTGgacgaaatttaaATGATTGCGAA
GATTGCCCAAATTGATCCAAACGATACTGATGTTATCAGAGTTGCTTGCC
GCAGATATTTCAACCATCAAAAACGGGATAAGAGGAAGAAAGATACAATG
ACTCCAGAACAGCTACAGAGTGATATCAAGCTGAATCGATCATCTTCAAG
AAGAACCAAGACATACCAAAGAAGACGCAAAATTGGCTTCCAGATGGATT
TGGAGGGGGAAGAGCTAGAGCTCTTCAATCTCATCAAAGGTGGAGAACTA
ATGACCGATGAGGAGTCAGAGTATGAAGACGGAGTTGAGACCGGGCGTCT
TATTGTAAGAAAACTGGCTTGGCGTAGCCAAAAGCTCGATGATTTGATCA
TCAAAATCGATACTGAAAATCCCTTAAAGGCTGTGAAAGGGCGAATTGTT
GGAGAACTGTCACAGCACGAGCCACCAATTGGCGTTGACGAAAGATTAAT
CGACATAATGCCTGTGgacgaaatttaaATGATTGCGAAGATTGCCCAAA
TTGATCCAAACGATACTGATGTTATCAGAGTTGCTTGCCGCAGATATTTC
AACCATCAAAAACGGGATAAGAGGAAGAAAGATACAATGACTCCAGAACA
GCTACAGAGTGATATCAAGCTGAATCGATCATCTTCAAGAAGAACCAAGA
CATACCAAAGAAGACGCAAAATTGGCTTCCAGATGGATTTGGAGGGGGAA
GAGCTAGAGCTCTTCAATCTCATCAAAGGTGGAGAACTAATGACCGATGA
GGAGTCAGAGTATGAAGACGGAGTTGAGACCGGGCGTCTTATTGTAAGAA
AACTGGCTTGGCGTAGCCAAAAGCTCGATGATTTGATCATCAAAATCGAT
ACTGAAAATCCCTTAAAGGCTGTGAAAGGGCGAATTGTTGGAGAACTGTC
ACAGCACGAGCCACCAATTGGCGTTGACGAAAGATTAATCGACATAATGC
CTGTGgacgaaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023856XLOC_023856Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039506-proteinTCONS_00039506-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039506-exon-sc0002131-1491911889:2923..3160TCONS_00039506-exon-sc0002131-1491911889:2923..3160Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1510915933:2923..3160TCONS_00039506-exon-sc0002131-1510915933:2923..3160Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1575043694:2923..3160TCONS_00039506-exon-sc0002131-1575043694:2923..3160Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1491911889:3297..3344TCONS_00039506-exon-sc0002131-1491911889:3297..3344Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1510915933:3297..3344TCONS_00039506-exon-sc0002131-1510915933:3297..3344Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1575043694:3297..3344TCONS_00039506-exon-sc0002131-1575043694:3297..3344Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1491911889:3559..3718TCONS_00039506-exon-sc0002131-1491911889:3559..3718Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1510915933:3559..3718TCONS_00039506-exon-sc0002131-1510915933:3559..3718Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1575043694:3559..3718TCONS_00039506-exon-sc0002131-1575043694:3559..3718Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1491911889:4228..4346TCONS_00039506-exon-sc0002131-1491911889:4228..4346Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1510915933:4228..4346TCONS_00039506-exon-sc0002131-1510915933:4228..4346Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1575043694:4228..4346TCONS_00039506-exon-sc0002131-1575043694:4228..4346Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1491911889:4540..5070TCONS_00039506-exon-sc0002131-1491911889:4540..5070Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1510915933:4540..5070TCONS_00039506-exon-sc0002131-1510915933:4540..5070Clytia hemisphaericaexon
TCONS_00039506-exon-sc0002131-1575043694:4540..5070TCONS_00039506-exon-sc0002131-1575043694:4540..5070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002131supercontigsc0002131:2923..5070 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.410096	0.908257	0.199036	0.0443064	1.50325	1.7475	2.10216	2.49527	1.55912	1.87099	1.23187	2.3639	3.22528	3.64105	3.05912	2.70914	4.9845	3.50851	2.55109	1.96247	3.15902	1.68627	1.53583	1.16003	2.8121	3.28059	1.14281	0.569918	0.588732	0.388359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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