TCONS_00039500 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039500
Unique NameTCONS_00039500
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039500 ID=TCONS_00039500|Name=TCONS_00039500|organism=Clytia hemisphaerica|type=transcript|length=867bp
GTAAAAGACGATCCAGAAAGGATTCTTCAAGTTCAACTACATCTGAAAGA
CCGACGCGAACTGTgaacaattttcaatgaaattgaacttgcaaatttag
aaaaacaacCACCGAGAAGGGCTCATATatatataagaaaaatttgGGAT
CGCTTTTCCGAACGACAAATTTGTAAAGCACTTGCTCAGTTCTTCATTAC
GGATGGTATTTATTAAAATAGTACTGAtgcaaaattggaaaataaagACA
AGTGTTGTCAGAATGAATTTCTAAAACATTGCAAGTTGTAgtcaaaaaat
aattgaaatacgTTTAAAggtacaaaaaaatcataattaatTAATTCCTA
TAGGGAGGGGGCACAGTTAAGGGTTTAAGGGTTTAAGGGTTAAGggtttt
tcatttgtttttcaagCACAGGGAAAGAAACTTAAGCAAACCAAGTTTCG
TCTAACAATTAAATCTCCGTAAACGTTCATGGGCTCTAGTGTTGCCACGT
TATATTATTCACCACATGACCATAAATATTTTctcaattcaaattcaaaa
gtgtaataaaaaattgatgatgaacAAATTAATTGGAAATACTAGTTGAC
AACAATAAGTTTCTTAATGATTCTAAAAACATGCGTATCAAAATATCTTG
GAAGGTAACTTTCATAAAACGATTACAATCGAATcaatcacttttgattt
tttgttcagTCAACCGGTAGATGATGCTATCTCTTCCAGGGTCCATATTC
CACATAGCGACAGAAATCGCGTAAGTTGCCAAGGCTAAGATCACCAATAA
CCAGAaccaaatattgaaaatgacaGGAAACATTGAGTCATATCTCGACG
CCAAATTCGAAGgatgc
Run BLAST on NCBI

transcript from alignment at sc0002129:17094..17960

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039500 ID=TCONS_00039500|Name=TCONS_00039500|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at sc0002129:17094..17960 (Clytia hemisphaerica)
gcatcCTTCGAATTTGGCGTCGAGATATGACTCAATGTTTCCtgtcattt
tcaatatttggtTCTGGTTATTGGTGATCTTAGCCTTGGCAACTTACGCG
ATTTCTGTCGCTATGTGGAATATGGACCCTGGAAGAGATAGCATCATCTA
CCGGTTGActgaacaaaaaatcaaaagtgattgATTCGATTGTAATCGTT
TTATGAAAGTTACCTTCCAAGATATTTTGATACGCATGTTTTTAGAATCA
TTAAGAAACTTATTGTTGTCAACTAGTATTTCCAATTAATTTgttcatca
tcaattttttattacacttttgaatttgaattgagAAAATATTTATGGTC
ATGTGGTGAATAATATAACGTGGCAACACTAGAGCCCATGAACGTTTACG
GAGATTTAATTGTTAGACGAAACTTGGTTTGCTTAAGTTTCTTTCCCTGT
GcttgaaaaacaaatgaaaaaccCTTAACCCTTAAACCCTTAAACCCTTA
ACTGTGCCCCCTCCCTATAGGAATTAattaattatgatttttttgtaccT
TTAAAcgtatttcaattattttttgacTACAACTTGCAATGTTTTAGAAA
TTCATTCTGACAACACTTGTctttattttccaattttgcaTCAGTACTAT
TTTAATAAATACCATCCGTAATGAAGAACTGAGCAAGTGCTTTACAAATT
TGTCGTTCGGAAAAGCGATCCcaaatttttcttatatatATATGAGCCCT
TCTCGGTGgttgtttttctaaatttgcaagttcaatttcattgaaaattg
ttcACAGTTCGCGTCGGTCTTTCAGATGTAGTTGAACTTGAAGAATCCTT
TCTGGATCGTCTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023850XLOC_023850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039500-exon-sc0002129-1491911889:17094..17960TCONS_00039500-exon-sc0002129-1491911889:17094..17960Clytia hemisphaericaexon
TCONS_00039500-exon-sc0002129-1510915933:17094..17960TCONS_00039500-exon-sc0002129-1510915933:17094..17960Clytia hemisphaericaexon
TCONS_00039500-exon-sc0002129-1575043694:17094..17960TCONS_00039500-exon-sc0002129-1575043694:17094..17960Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002129supercontigsc0002129:17094..17960 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
96.6202	91.1178	97.6161	108.821	5.59873	4.71148	15.8048	14.6665	37.3932	31.5162	41.6248	39.6433	45.1822	45.2463	44.1791	43.3697	28.0092	30.7413	29.1736	30.8879	29.8708	30.8181	54.9587	49.9654	9.20433	10.7462	32.5299	35.1113	61.4002	60.4841
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039500 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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