TCONS_00039496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039496
Unique NameTCONS_00039496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039496 ID=TCONS_00039496|Name=TCONS_00039496|organism=Clytia hemisphaerica|type=transcript|length=637bp
CCCCCTTGATGACACACCTTTCACATGCATAGAACCCACCATGCCCTTTT
GTACACTTAATAAATTGTCTTGCTGGGGCATCACAAAGCATGcaccaaat
tttgacaaaatattgcTTGTCCTCAAATACGAAACCGTGATCTCTAAGCT
CTTTGTATTCTTTCAGGAAGTCATCTAAATATTCTGAACAGTTGTTTGGC
TTTCCTTCTCCAGTGTAAAGTGAAATAACAAAAGGATGGGGATGTACAAA
CATTCCCAAAATTGGCCAAAGATCTAAAGCAGTAGACTTAAAAAGTGGTA
ATCCATCCACATTAATCATCAGCTTGATGATTTCATGATGATTCCTGTTT
TCATACCCAAGTAAATATATTGGCCCCCACACTTTGTAGTTGTATTCACC
TCTCTTGGGGTGCGAAGCAAGGTGCGATCATCTTTGGGGACTTCATTTTC
ATGTCCATGATCATGTAAAATTGAAAGAAGTTCTGAAAGTTCACTTCGCT
TACAACTGTTTTTACAAGCCCATCTTCTTAACTGCTCTGCCAAGCTTGGA
CCTTCATTCCAATTGACACCCTCCATGCAATCATCTTCAGAGCTACTGCT
GATATACTCATCTACTGATACCCAGTTATTATCTGTG
Run BLAST on NCBI

protein sequence of TCONS_00039496-protein

>TCONS_00039496-protein ID=TCONS_00039496-protein|Name=TCONS_00039496-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MINVDGLPLFKSTALDLWPILGMFVHPHPFVISLYTGEGKPNNCSEYLDD
FLKEYKELRDHGFVFEDKQYFVKIWCMLCDAPARQFIKCTKGHGGFYACE
RCVIKG
Run BLAST on NCBI

transcript from alignment at sc0002128:6567..7203

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039496 ID=TCONS_00039496|Name=TCONS_00039496|organism=Clytia hemisphaerica|type=transcript|length=637bp|location=Sequence derived from alignment at sc0002128:6567..7203 (Clytia hemisphaerica)
CACAGATAATAACTGGGTATCAGTAGATGAGTATATCAGCAGTAGCTCTG
AAGATGATTGCATGGAGGGTGTCAATTGGAATGAAGGTCCAAGCTTGGCA
GAGCAGTTAAGAAGATGGGCTTGTAAAAACAGTTGTAAGCGAAGTGAACT
TTCAGAACTTCTTTCAATTTTACATGATCATGGACATGAAAATGAAGTCC
CCAAAGATGATCGCACCTTGCTTCGCACCCCAAGAGAGGTGAATACAACT
ACAAAGTGTGGGGGCCAATATATTTACTTGGGTATGAAAACAGGAATCAT
CATGAAATCATCAAGCTGATGATTAATGTGGATGGATTACCACTTTTTAA
GTCTACTGCTTTAGATCTTTGGCCAATTTTGGGAATGTTTGTACATCCCC
ATCCTTTTGTTATTTCACTTTACACTGGAGAAGGAAAGCCAAACAACTGT
TCAGAATATTTAGATGACTTCCTGAAAGAATACAAAGAGCTTAGAGATCA
CGGTTTCGTATTTGAGGACAAgcaatattttgtcaaaatttggtgCATGC
TTTGTGATGCCCCAGCAAGACAATTTATTAAGTGTACAAAAGGGCATGGT
GGGTTCTATGCATGTGAAAGGTGTGTCATCAAGGGGG

Coding sequence (CDS) from alignment at sc0002128:6567..7203

>TCONS_00039496 ID=TCONS_00039496|Name=TCONS_00039496|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0002128:6567..7203 (Clytia hemisphaerica)
ATGATTAATGTGGATGGATTACCACTTTTTAAGTCTACTGCTTTAGATCT
TTGGCCAATTTTGGGAATGTTTGTACATCCCCATCCTTTTGTTATTTCAC
TTTACACTGGAGAAGGAAAGCCAAACAACTGTTCAGAATATTTAGATGAC
TTCCTGAAAGAATACAAAGAGCTTAGAGATCACGGTTTCGTATTTGAGGA
CAAgcaatattttgtcaaaatttggtgCATGCTTTGTGATGCCCCAGCAA
GACAATTTATTAAGTGTACAAAAGGGCATGGTGGGTTCTATGCATGTGAA
AGGTGTGTCATCAAGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023846XLOC_023846Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039496-proteinTCONS_00039496-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039496-exon-sc0002128-1491911889:6567..7203TCONS_00039496-exon-sc0002128-1491911889:6567..7203Clytia hemisphaericaexon
TCONS_00039496-exon-sc0002128-1510915933:6567..7203TCONS_00039496-exon-sc0002128-1510915933:6567..7203Clytia hemisphaericaexon
TCONS_00039496-exon-sc0002128-1575043694:6567..7203TCONS_00039496-exon-sc0002128-1575043694:6567..7203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002128supercontigsc0002128:6567..7203 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.497352	0.646661	0.0938545	0	3.5771	3.79834	1.59856	1.89563	0.558811	1.29783	1.25971	0.49685	0.165386	0.400763	0.941375	1.51536	2.17793	1.53073	1.49797	1.2909	0.801446	1.17275	0.570253	0.432036	0	0	0.340984	0.48521	1.10404	0.374948
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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