TCONS_00039487 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039487
Unique NameTCONS_00039487
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039487 ID=TCONS_00039487|Name=TCONS_00039487|organism=Clytia hemisphaerica|type=transcript|length=691bp
TGAAACCACGAATCTTTTATTTCACCAAAGCTTTCACACCTTTATTTGCT
TGGTTCCTTCCGATACTAGCTGCAACCCTTCAGTTCTGTTTGGATGAGAG
AAAGGAGGACGAAGTTGTGGTATTGTGCGAGAATATCTGTCAAGTAAAAA
TGGTTCAGTATGCCCTGGAAAGGATACACAAGCGTCCAATTGCATACGCA
CCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAGATGAaggaaaa
attcgtcaaaaatttgGACGAGATGGAGACAGTTCTGATATCCGATTATC
GGTCTGTTCGTGGATTGGAAATGGNNAAAAATATGTCGATGGGACTTTAG
CAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAAA
GTACAATTCCAATACAACGAAAAGGACggctcaaaacaaacaaaaattat
ttcacagaAATTGACCGATTTCAGTTTGGACGTTTCACAATCTCTAgatg
attttaacaaaaatgaagAGCTATGGCAAAACTATTTCAGGATGGCGTTT
ACTCTTTCAACTTCCATTTCATCTTTGGGAATGTAAGTCAATACAGTTGA
TGCCCTCTGATTCGGCATTCtgttattcgataagctcccattATCAATCA
ACTAACAGTCATTTGACaaatttcctttaaatttctcataa
Run BLAST on NCBI

protein sequence of TCONS_00039487-protein

>TCONS_00039487-protein ID=TCONS_00039487-protein|Name=TCONS_00039487-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
KPRIFYFTKAFTPLFAWFLPILAATLQFCLDERKEDEVVVLCENICQVKM
VQYALERIHKRPIAYAPYLTGEYPQDIHKMKEKFVKNLDEMETVLISDYR
SVRGLEMXKNMSMGL
Run BLAST on NCBI

transcript from alignment at sc0002124:25798..26646-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039487 ID=TCONS_00039487|Name=TCONS_00039487|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at sc0002124:25798..26646- (Clytia hemisphaerica)
TGAAACCACGAATCTTTTATTTCACCAAAGCTTTCACACCTTTATTTGCT
TGGTTCCTTCCGATACTAGCTGCAACCCTTCAGTTCTGTTTGGATGAGAG
AAAGGAGGACGAAGTTGTGGTATTGTGCGAGAATATCTGTCAAGTAAAAA
TGGTTCAGTATGCCCTGGAAAGGATACACAAGCGTCCAATTGCATACGCA
CCTTACCTTACCGGAGAATATCCTCAAGACATCCACAAGATGAAGGAAAA
ATTCGTCAAAAATTTGGACGAGATGGAGACAGTTCTGATATCCGATTATC
GGTCTGTTCGTGGATTGGAAATGGNNAAAAATATGTCGATGGGACTTTAG
CAATCAAGACACACGTTGAATCGAGCAAAGACGCAGAAGATCTTCTGAAA
GTACAATTCCAATACAACGAAAAGGACGGCTCAAAACAAACAAAAATTAT
TTCACAGAAATTGACCGATTTCAGTTTGGACGTTTCACAATCTCTAGATG
ATTTTAACAAAAATGAAGAGCTATGGCAAAACTATTTCAGGTATAATTTT
TCTGTTGAAATTTTCGATTTTCAATGATCTTTATTATAGCAAAAAGCTCA
ATGAGAGGATATAAGTCATATTTTCCAAAATTAGGTGCCCGCTAATCCTT
TAACCAAATATATTCCAGACTAAAAAATACATCATTTTTTTCCTTCAGGA
TGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAATGTAAGTCAAT
ACAGTTGATGCCCTCTGATTCGGCATTCTGTTATTCGATAAGCTCCCATT
ATCAATCAACTAACAGTCATTTGACAAATTTCCTTTAAATTTCTCATAA

Coding sequence (CDS) from alignment at sc0002124:25798..26646-

>TCONS_00039487 ID=TCONS_00039487|Name=TCONS_00039487|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at sc0002124:25798..26646- (Clytia hemisphaerica)
AAACCACGAATCTTTTATTTCACCAAAGCTTTCACACCTTTATTTGCTTG
GTTCCTTCCGATACTAGCTGCAACCCTTCAGTTCTGTTTGGATGAGAGAA
AGGAGGACGAAGTTGTGGTATTGTGCGAGAATATCTGTCAAGTAAAAATG
GTTCAGTATGCCCTGGAAAGGATACACAAGCGTCCAATTGCATACGCACC
TTACCTTACCGGAGAATATCCTCAAGACATCCACAAGATGAAGGAAAAAT
TCGTCAAAAATTTGGACGAGATGGAGACAGTTCTGATATCCGATTATCGG
TCTGTTCGTGGATTGGAAATGGNNAAAAATATGTCGATGGGACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023838XLOC_023838Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039487-proteinTCONS_00039487-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039487-exon-sc0002124-1575043694:26107..26646TCONS_00039487-exon-sc0002124-1575043694:26107..26646Clytia hemisphaericaexon
TCONS_00039487-exon-sc0002124-1575043694:25798..25948TCONS_00039487-exon-sc0002124-1575043694:25798..25948Clytia hemisphaericaexon
TCONS_00039487-exon-sc0002124-1510915933:26107..26646TCONS_00039487-exon-sc0002124-1510915933:26107..26646Clytia hemisphaericaexon
TCONS_00039487-exon-sc0002124-1510915933:25798..25948TCONS_00039487-exon-sc0002124-1510915933:25798..25948Clytia hemisphaericaexon
TCONS_00039487-exon-sc0002124-1491911889:26107..26646TCONS_00039487-exon-sc0002124-1491911889:26107..26646Clytia hemisphaericaexon
TCONS_00039487-exon-sc0002124-1491911889:25798..25948TCONS_00039487-exon-sc0002124-1491911889:25798..25948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002124supercontigsc0002124:25798..26646 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.167126	0.660185	0.639295	0.22224	5.22179	4.15884	5.31861	6.17338	2.93399	6.0316	6.19403	4.5417	11.7854	8.86615	8.35605	12.0884	7.18573	10.9782	18.1246	19.1729	7.98078	9.28192	5.53104	7.05303	8.8726	9.37656	19.465	23.0342	19.3361	17.2239
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039487 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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