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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039483 ID=TCONS_00039483|Name=TCONS_00039483|organism=Clytia hemisphaerica|type=transcript|length=915bp
GGAAAAGTTCGTTCAATGCACTCAGACAATGGAACTAACTTCGTTGGCAC
CGAAAGAGAGCTGAAGAAGGCTATCTCAGAAATGGACCACGAAAGAATTG
CAAAATACATGAACGAGCAAGACGGTGATTGGATTTGGAAATTCAATCCC
CCAGCTTCAAGTCATATGGGTGGTGTGTGGGAGCGTCACATCAGAAGTAT
CAGAAGGATCCTTGCTGCACTCTTGAAATCTCAAGGACCAAGTCTCAACA
CTGAAACCCTCACAACACTGCTTGTCGAAGTAGAATCAATTATCAACTCA
AGACCATTAACTGTCGACACCGTAAGCGACCCAACAGAACCAATGGCACT
ATCACCTATGAATTTGCTGACCATGAAAAGCANCAATTATCAACTCAAGA
CCATTAACTGTCGACACCCTAAGCGACCCAACAGAACCAATGGCACTATC
ACCTATGAATTTGCTGACCATGAAAAGCAAAGTCGTCTTACCACCACCAG
GAGAGTTCGACGAATCTGATTTATATTCTCGCAAACGATGGAGAAGAATT
CAATTCTTAGCAAACGAGTTTTGGGAGCGGTGGAGGAAAGAGTATCTTTT
TCAATTGCAGCACCGCACCAAATGGAGAACCAAAGAAATGAATTTTCGAT
CTGGAGACATAGTCCTACTAAAGGACAACACACTAACAAACACACGAAAC
GATTGGCCGATGGGAACGATTGAAAAGGTGTATCCAGACGACACTGGCAC
AGTACGTTCGGTAGACTGTCgaattggaaaaaatgtttaCAGACGACCAA
TAACAAAATTAGTGTTACTGATTGAGTGTTCGACCCCCGACGAGGAGCCA
TCAGATTTGGAGTAATCATATGATCGCGAATCATATGAGAGGAGCCATGT
GTTGCGGCCATGATA Run BLAST on NCBI protein sequence of TCONS_00039483-protein >TCONS_00039483-protein ID=TCONS_00039483-protein|Name=TCONS_00039483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
GKVRSMHSDNGTNFVGTERELKKAISEMDHERIAKYMNEQDGDWIWKFNP
PASSHMGGVWERHIRSIRRILAALLKSQGPSLNTETLTTLLVEVESIINS
RPLTVDTVSDPTEPMALSPMNLLTMKSXNYQLKTINCRHPKRPNRTNGTI
TYEFADHEKQSRLTTTRRVRRI Run BLAST on NCBI transcript from alignment at sc0002119:28648..29562 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039483 ID=TCONS_00039483|Name=TCONS_00039483|organism=Clytia hemisphaerica|type=transcript|length=915bp|location=Sequence derived from alignment at sc0002119:28648..29562 (Clytia hemisphaerica)
TATCATGGCCGCAACACATGGCTCCTCTCATATGATTCGCGATCATATGA
TTACTCCAAATCTGATGGCTCCTCGTCGGGGGTCGAACACTCAATCAGTA
ACACTAATTTTGTTATTGGTCGTCTGtaaacattttttccaattcGACAG
TCTACCGAACGTACTGTGCCAGTGTCGTCTGGATACACCTTTTCAATCGT
TCCCATCGGCCAATCGTTTCGTGTGTTTGTTAGTGTGTTGTCCTTTAGTA
GGACTATGTCTCCAGATCGAAAATTCATTTCTTTGGTTCTCCATTTGGTG
CGGTGCTGCAATTGAAAAAGATACTCTTTCCTCCACCGCTCCCAAAACTC
GTTTGCTAAGAATTGAATTCTTCTCCATCGTTTGCGAGAATATAAATCAG
ATTCGTCGAACTCTCCTGGTGGTGGTAAGACGACTTTGCTTTTCATGGTC
AGCAAATTCATAGGTGATAGTGCCATTGGTTCTGTTGGGTCGCTTAGGGT
GTCGACAGTTAATGGTCTTGAGTTGATAATTGNTGCTTTTCATGGTCAGC
AAATTCATAGGTGATAGTGCCATTGGTTCTGTTGGGTCGCTTACGGTGTC
GACAGTTAATGGTCTTGAGTTGATAATTGATTCTACTTCGACAAGCAGTG
TTGTGAGGGTTTCAGTGTTGAGACTTGGTCCTTGAGATTTCAAGAGTGCA
GCAAGGATCCTTCTGATACTTCTGATGTGACGCTCCCACACACCACCCAT
ATGACTTGAAGCTGGGGGATTGAATTTCCAAATCCAATCACCGTCTTGCT
CGTTCATGTATTTTGCAATTCTTTCGTGGTCCATTTCTGAGATAGCCTTC
TTCAGCTCTCTTTCGGTGCCAACGAAGTTAGTTCCATTGTCTGAGTGCAT
TGAACGAACTTTTCC Coding sequence (CDS) from alignment at sc0002119:28648..29562 >TCONS_00039483 ID=TCONS_00039483|Name=TCONS_00039483|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0002119:28648..29562 (Clytia hemisphaerica)
TCAGATTCGTCGAACTCTCCTGGTGGTGGTAAGACGACTTTGCTTTTCAT
GGTCAGCAAATTCATAGGTGATAGTGCCATTGGTTCTGTTGGGTCGCTTA
GGGTGTCGACAGTTAATGGTCTTGAGTTGATAATTGNTGCTTTTCATGGT
CAGCAAATTCATAGGTGATAGTGCCATTGGTTCTGTTGGGTCGCTTACGG
TGTCGACAGTTAATGGTCTTGAGTTGATAATTGATTCTACTTCGACAAGC
AGTGTTGTGAGGGTTTCAGTGTTGAGACTTGGTCCTTGAGATTTCAAGAG
TGCAGCAAGGATCCTTCTGATACTTCTGATGTGACGCTCCCACACACCAC
CCATATGACTTGAAGCTGGGGGATTGAATTTCCAAATCCAATCACCGTCT
TGCTCGTTCATGTATTTTGCAATTCTTTCGTGGTCCATTTCTGAGATAGC
CTTCTTCAGCTCTCTTTCGGTGCCAACGAAGTTAGTTCCATTGTCTGAGT
GCATTGAACGAACTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039483-exon-sc0002119-1491911889:28648..29562 | TCONS_00039483-exon-sc0002119-1491911889:28648..29562 | Clytia hemisphaerica | exon |
| TCONS_00039483-exon-sc0002119-1510915933:28648..29562 | TCONS_00039483-exon-sc0002119-1510915933:28648..29562 | Clytia hemisphaerica | exon |
| TCONS_00039483-exon-sc0002119-1575043694:28648..29562 | TCONS_00039483-exon-sc0002119-1575043694:28648..29562 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002119 | supercontig | sc0002119:28648..29562 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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