TCONS_00039478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039478
Unique NameTCONS_00039478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length450

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039478 ID=TCONS_00039478|Name=TCONS_00039478|organism=Clytia hemisphaerica|type=transcript|length=450bp
ATatagattgttttattttgtacaATCAAAATATTGCTGTACGATTGTTT
AACAAGAAGTATCCGATCAAATGGAGGTAAAGCACTTTTATCCAATCAGA
AAGGattcttagaaaaaattaaaatctttgcatcaaattcccgctctCGT
TTGAGAattaaagttaagaaaaaatTAATCCCTTAGAATCAATAGTGACA
GTGCTGAATTATTGACAGTGACAATATTCAAAGCTCCTAATGCTTCACAC
AGATTTCGCATTAAGCAAGGTTAAAAGCCTTGAACATATATCATTCATAG
TCGCATTATTAACCATCTAGAGCCTTACAACGTCCTAACAGACCACCAac
acaaataaataaaaaaagcgtTAATAAAAACTGTAAATGATCTTGTGAAA
ACCCCAAATGATAAAGGGTTTAGGCAGTTGCAGTCTTACTCCAATTCAGC
Run BLAST on NCBI

transcript from alignment at sc0002119:6..455

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039478 ID=TCONS_00039478|Name=TCONS_00039478|organism=Clytia hemisphaerica|type=transcript|length=450bp|location=Sequence derived from alignment at sc0002119:6..455 (Clytia hemisphaerica)
GCTGAATTGGAGTAAGACTGCAACTGCCTAAACCCTTTATCATTTGGGGT
TTTCACAAGATCATTTACAGTTTTTATTAacgctttttttatttatttgt
gtTGGTGGTCTGTTAGGACGTTGTAAGGCTCTAGATGGTTAATAATGCGA
CTATGAATGATATATGTTCAAGGCTTTTAACCTTGCTTAATGCGAAATCT
GTGTGAAGCATTAGGAGCTTTGAATATTGTCACTGTCAATAATTCAGCAC
TGTCACTATTGATTCTAAGGGATTAattttttcttaactttaatTCTCAA
ACGagagcgggaatttgatgcaaagattttaattttttctaagaatCCTT
TCTGATTGGATAAAAGTGCTTTACCTCCATTTGATCGGATACTTCTTGTT
AAACAATCGTACAGCAATATTTTGATtgtacaaaataaaacaatctatAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023830XLOC_023830Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039478-exon-sc0002119-1491911889:6..455TCONS_00039478-exon-sc0002119-1491911889:6..455Clytia hemisphaericaexon
TCONS_00039478-exon-sc0002119-1510915933:6..455TCONS_00039478-exon-sc0002119-1510915933:6..455Clytia hemisphaericaexon
TCONS_00039478-exon-sc0002119-1575043694:6..455TCONS_00039478-exon-sc0002119-1575043694:6..455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002119supercontigsc0002119:6..455 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.588842	0.861321	0.333359	0.326139	0.992608	0.784372	0.567787	0.708741	0.124052	0.460973	0.447432	0.784331	0.783241	1.01675	0.417955	0.717648	0.552552	0.226539	0	0.327507	0.853989	0.833092	0.675155	0.153453	0.158053	1.69271	1.61484	0.215425	0.980353	0.166471
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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