TCONS_00039475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039475
Unique NameTCONS_00039475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2156

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039475 ID=TCONS_00039475|Name=TCONS_00039475|organism=Clytia hemisphaerica|type=transcript|length=2156bp
AAAATCAGGGAGCTAATGATCCAAAATGATGGATTGACCAAATCAAGTTT
ATCCCATGTACAATTGATCACTGAATTGGAATCCAAAAATGAAACCTTGA
GGAGAACTGTTGATGTTTCTAGTGTGGAAAGTAGAAAGTTGAAAGAAGCT
CTCAAAGTTACAGTGACAGACAAGAATGCATtgatgaaagaaaagaaaga
tgcCAGTAATGAAAAACAAGTCCAACATGACATGGAACTtgaacaacaaa
agaaattactTGAAACATTGAAAGACAACTGCAATGCTCAGCTTgagatt
tggaaaaagaaaGTCGAAGATGCTGAAAACCAAAAACTatcatttaaaaa
tcaaattaacaaTCTAATGATCAAAGTAAACGAAGAtgaattcaaaatga
aaatgtttgagcAAAATCAGatttcaaaaagcAATTATTTGGAATCAATG
TTGTCttcagaaaagaaaatgaaggaaGACCTAATGAAAAAACTGTCTGG
ACTGGAGCACGATCGAAACACAATGACTGAGAAGTTTGAATCAATACTAA
GTGAAAATAGAACACTTTCAAACGGTATTGAATCACAAACCCAGAAAATA
GCTGAACTAGAAAATGCAAACTtgcaacaaaaagaaaaattatcatgGAT
GAACATTGAACAAGAATCTTCAAGTTTGGTGAAAAAGAAGATGACAGATA
TGATTCAAGAGAAAAAACAGCTCGCATATGAAAGAGGTATATTGCAAACC
AATGTTAAGCAACTCAAGGACAAGAATCATGAACTTCAAACATGTCTGGC
TCAGAACGATGACACTAACAAAGAACTCACACAAAGCATTTCCTACCTGA
AGAAAGAGATTGCTATTTATaaagattttgaagaaaaactgCAAAGAAAG
GAAAGTGAATTCAGGTCCTTGAAAGCTGACTTTGAAAAGAAAGAAGAAGT
TCTTCAAGAGCTGCTCTCTAGATACAAGAAACTGGATGCAGATCATATCT
CTCTGAAAGAAGACCGTATTAAACAAACAAATGAATTCCAATCATCGGAA
AATAAACTGAAGCGAGAAGTAGAGAAATTGATGTCAAACCTCAAGTCAAA
CCACAACGAACGAAACAATGTCAGTGAAACGCTTAAACAGCTGCTAACAT
CAAATAAGCAACTACAAAGTGAGCTTGAAGAAGTACAAGAAGCACTTGGg
aagaaagattttgaaattgaaacattaacAAGTGAAAGGGAATTAcacat
gaaaaatatcaaaggaATGGCTAAAGATCTTGATGGAATGGCCAAAAATC
TAGACCAAGTGGAAAATGACTATTGTAGTAAAaTTAATATCttggagaaa
aatattttggaagaaaAGAAAAGGATTTGTGCATTGTCAACCGATAAAAA
GGACTTGGAAAAGCAATTGCAATCTAAAGAGGAGCTTATCAATAATGTCT
CCCAGTCAAAAGAAAATTATATCACGAACATAAAAGAGGAGAAGGAAAAA
CAagaaatgttattaaaagaaacTCACAAGACGGAACTGTCAAAAATCAG
GAAAACAATGGCAATAATGAGGGAGGACtttgcaaagaaaaaagaagaat
tcgATCACAGGCTTTCCTTTATGGATgCCTCAAAACTGGAAAGTTTTGTC
GAACAAGTATCAGAGCTGCAGAACGAGTTGTCTACTATAATCGAAGAGCA
TAATGAGATAATACGAGAAAAAGATGAGTTGTATCTCGAGGAAAAACAAA
AGCGCAAGAACATTGAATCCAGATACAAGAATGTTTTGAATAGGCAACAG
AGAAAAGATGGAGGAGTTAAGTCACTGTTCTCGACCACTGAAGAAAGCAA
CAACCTTGTGGACCATCATCCAAGACAAAGTGCTGTACTTGAATATCAAA
AATTAATTGATGGAGAAGACACAAGAATGAGAGACATCCAGCACAAGTTT
GAAGACCTGcatagaaagaaaagaaatggTTTCAGATGATGAGCAATACA
CTggtttgaaatttgtttatatTATCTGATATTATACGGTTCTTAGGTTG
TGCAAGAGTTTGGTTCGTCTTAAAAGGTTTGGGAATCTAAATAACAAATG
GAAGAAATCAAAGCAAAGCAATTAAACAGTGAAAAATACCTTATTCCCAT
TGATTT
Run BLAST on NCBI

transcript from alignment at sc0002119:8872..21384+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039475 ID=TCONS_00039475|Name=TCONS_00039475|organism=Clytia hemisphaerica|type=transcript|length=12513bp|location=Sequence derived from alignment at sc0002119:8872..21384+ (Clytia hemisphaerica)
AAAATCAGGGAGCTAATGATCCAAAATGATGGATTGACCAAATCAAGTTT
ATCCCATGTACAATTGATCACTGAATTGGAATCCAAAAATGAAACCTTGA
GGGTAAACAAGTTACCTTATTTATGGAAACAGGAGAAAAGTGTCCCTAAT
AGAATTGTCCACCCTCGAACTCGATTGTTTTCGTGAAAGTATGAAGGTAT
GATTCAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCTCTTTGTAAC
ATTCAAGAGTGTTCTTGATTTAATTTTTACTCAAtagctttcttcataac
ttttagAGTGaatttctaagatcacttttattgaaTTGTTTTCATCTTCA
GCTTACTTTCATCTTCAGCTTACTTTCTCTATTTCTGTAACAAGTTGTTC
CAAGGTCACCTTCAAAAGCTAGCTTCCTATTGGAGTTAGAAAACAATGAT
TTGAGTCGTACATATATCAGAGTGactaaaaatatattaaattgCCTGAT
ACAGTAAGATGATAcattgaaaacaattaaaatggcTTTTTAGCTGATAT
TTTAGACCCTGCTTGGTCAGGCTTGGTAATTGTCATCTTTAGCATAGCGT
TAAAACATTGTCTCCAAAACGCAAAAGTATCAGTCAAAATATTTAACGAA
AGTACCTAAGATACTTTTCTTTATCCCATTGACTTGAAAAATATGTAACC
TTacttaaaaaatgtgtaaccTTTTTTTGAGTAAAAAGGGACCCCCACCA
GCCCCCACCCCCTTTTTAGAATAGAAGTAGATTGTCAGGGAATACATCAC
CCTTGAATAATGCCTTTAATATGTAGCCAATTTCACCTCACCAAAATGAG
GAAGAGCTGCAGAGAGCTCaaattttggaaagttttcaacaattagattt
ttcaaaattagaaaatcggAAATCAAGTATGGGTCAGAAGTAGCCTGCAA
GCTGTACCTGGTCTTAAAGGTATATGGTCCATTTTTTGCCACCTGAcagt
ttcttttattttgcaGATCATcccaaaattcacttttatgTCTAAAACAG
CCTAAGGTTTCTAAGGATTCAATTCAAGGTACCTAAGCATTATTAATGAC
GTTTTTATCAGTGCTAGGTATTGATAATAAACCTTGCAGTCAAAACTATG
CTACAAATCAGTCTTTAAATACCAACAGCTGGAATGTTGCACACTATGTC
TTGGATGGTCAATATCTATTTCACTGGTGAAAATTAAAGCTTTTTAGTAG
TTCCTGAGTTCTTGAGGTGGCCTGCTCACTATAAAACGGTCTGCAAAATA
CCCAGCACTTATGGGATCAAAAGGTTTTTTATTGCTGGTCTCTTTATTAA
GATATCAACCTTCAGAAACAAAATGTCACTCATTGAAAAAGCCAATCCTT
CAAGCTGTAAGGGGCCTGAGCCTCCCCAAAGATACTTCCCCTACACTAGA
AAATAAGACGAAGCAAAAAGGTTTTAGGTTATATCACAAGAAGAGCTCTA
TTATAAAAGTCATCATGGTTTATTTAGCTTTCAAAAGATGCAAACAAACA
CGAAAATACAGAAAAACAGCAAGTAGAGAATCATTCAAAACTTTTGAGGA
AAATAGAAGAACTTGAAAGCATCGTTGAAACTGAACGCATAAAGATTGTG
AACCTAAATAAAGAAAGCGCAACCTTGAAGCAGGATGCATTACTGGCAAG
GCAagagtttgaaaaagaatttaatgATCGTATCAGGCTGGAAAATCTTT
TAGCTGTACATGAAGCTGACTATGGtattcttcttttgtttgatttttta
ttgacgACTTTTTGATAAGATTTGACTGCTATGCTTGTGATGATGTTTTA
GGTGCTagaatcaggtctctaaaattaTAAATGTTATTTAACAAATGCTT
TTTGTTGGAAAATATTCGCATTTTCACGACCAGccagaaaattgaaattt
gggTAATCTTGGattctttacattttttctcTCTGCCACATACCAAACTA
TGTTTTCTACTTTTCATTTTAAGAACTATCTAATCAAAAAATCAGGGAGC
TAATGATCCAAAATGATGGATTGACCAAATCAAGTTTATCCCATGTACAA
TTGATCACTGAATTGGAATCCAAAAATGAAACCTTGAGGGTAAACAAGTT
ACCTTATTTATGGAAACAGGAGAAAAGTGTCCCTAATAGAATTGTCCACC
CTCGAACTTGATTGTTTTCGTGAAAGTATGAAGGTATGATTCAAAATggt
cgcatcaaaataaaaaagctttaagtcgatttttgattggaattcaattg
acgtttttgcttacgttaatttttATTGTCCCGCAAACTTGTAATTttcc
tcctagcttttgtaatttccttctaaagtaaaattttcatcCTTTGGCTT
TGGAGATGCATCACCTTTTTCAgatttcttactaacttcgaaggcttaat
ggaatactatccaattaaaactcgattcaaattttttgagacctcttttt
aaagtgtcagattgatttccagtgtcaAATTGACATCTTTCAGAATTTCA
ATCCGAACCATGagattaccttaagggaaaaaattttcgcgagaagaaat
tttaggggaagaaattttcgcggaatttaatttcgcgaatttgggcataa
ttcgcgaaatttcaaaacacaccaaaatggctTTGGAGGAAGAAGACGGC
GATGAAGTTTAATCATGACTTATCATAGAAACATTCATATTTGAcgttat
tattttgttgttaaagtTTGTTAATGTAACTGAAATATGTcttgaaatcg
atgaaaaatataaaaaacattttctctgtaaaaaagattcttttgaaatt
tctcaatcgcgaaattaaattccgtgaaacttttgaaatcggctcattcg
cgaaattaaattctgcgaattttgccattttgaaactttgattcgcaaaa
ttaaattctgcgaaaatttcttctcgcgaaaatttcttcccttaaggtaa
ccaggaatcccatgcttgttggacctaccctggtgggtggaggtccttta
aattaaccgacGTTTGTTcattcgtctgttaccagcttttcttgggatta
tctcattagttttttctgattttttgcacagtgatgtaaaatggtaatat
ttaaaatctgatgaagcccgattttcaaaaaatattttttttgggccaat
ttgtgCCAAAAAGTCCctaaaatgagattttttggaCTTATGTgtgaaat
ttcttcattagTTTGTACTGCTCACtacactttcttactctcttgctatt
tttactatttttagcTGATTCTCatcaccaggtaggtccattcagcatgt
tgcttgttttcgtgaaagtctggataaattaccctcggtaaaatttcaaa
atgttttaaattttcaggaaatttcaaaaaacttcaaaattgaCATCATT
GTTTTCATGCTGGCCTTAAGGCTTATTTGCCCTAAACTGATAtgacttaa
ggcttttttacccTGAAACTAAAGTAAACTTGGTTGGTTTTTGATcgatt
taagcaaaaaaaaaaataaaagaagggGGTGTAAAGCATCGTTATGATGG
TCATagttcaattttccaaaaaaaggacttaaagcttttttattttgctg
CGACAAAATACAGTAATGAAACATGACAGCCATAGTAATGACTCTTTCTT
TAGAGAACTGTTGATGTTTCTAGTGTGGAAAGTAGAAAGTTGAAAGAAGC
TCTCAAAGTTACAGTGACAGACAAGAATGCATtgatgaaagaaaagaaag
atgcCAGTAATGAAAAACAAGTCCAACATGACATGGAACTtgaacaacaa
aagaaattactTGAAACATTGAAAGACAACTGCAATGCTCAGCTTgagat
ttggaaaaagaaaGTCGAAGATGCTGAAAACCAAAAACTatcatttaaaa
atcaaattaacaaTCTAATGATCAAAGTAAACGAAGAtgaattcaaaatg
aaaatgtttgagcAAAATCAGGTATGTACCAGGTGTTTAGCTAAGGTATA
CTTTAGCTAAGGAGTTTTGCTATACACTAAACCTACACTGATGATGGTGT
GGGATTgattgacttttaaatttgattcagAAATTGAATTGCATGCCTCC
GTTCTGTTAAGTAGCTGTATAAAACCCATTTACTTAAAAACGTAAATCTG
TCTGCTTTTCATGAGATATTATTTTGTCAAAGTTGAAGTTGAATAATTAT
TAGAGATGGTTGCAATGCTGAAACATCTCCTATGAACTTAGATTAATTTA
TAGTTGGCAAcgttattttgttttttcagatttcaaaaagcAATTATTTG
GAATCAATGTTGTCttcagaaaagaaaatgaaggaaGACCTAATGAAAAA
ACTGTCTGGACTGGAGCACGATCGAAACACAATGACTGAGAAGTTTGAAT
CAATACTAAGTGAAAATAGAACACTTTCAAACGGTATTGAATCACAAACC
CAGAAAATAGCTGAACTAGAAAATGCAAACTtgcaacaaaaagaaaaatt
atcatgGATGAACATTGAACAAGAATCTTCAAGTTTGGTGAAAAAGAAGA
TGACAGATATGATTCAAGAGAAAAAACAGCTCGCATATGAAAGAGGTATA
TTGCAAACCAATGTTAAGCAACTCAAGGACAAGAATCATGAACTTCAAAC
ATGTCTGGTAAGCTAAAGCTATAATACAGTTCATGTATCATCATGTAATC
TGACTGGTTTGTTGAAGAGAGCAAATAGTTGATTTGTTATATGCATttta
aaggaattatacggtgttatatacacccaactcgtctgaaactgatgtca
gcaaaatttaaaaaaaagagtcctttcaaatttgtaaataaaaggaagaa
aaaaatcttgctccacatttttcttaattcattacaaaagattctattta
tttcaatctgctgaatcaacatacattataactatgtaaaaggtcaatgg
ctttaaaaacatattttactGCACGTGTTAAGTAAACTGATTTTAAAAAA
CGATTTGGTACATATTTGGCAATGTaaggtattttttcaaaatacttttc
ACACATTAGGCTCAGAACGATGACACTAACAAAGAACTCACACAAAGCAT
TTCCTACCTGAAGAAAGAGATTGCTATTTATaaagattttgaagaaaaac
tgCAAAGAAAGGAAAGTGAATTCAGGTCCTTGAAAGCTGACTTTGAAAAG
GTCTGTTTTACCACTTTAACTATTTTTCAACTAAGTTGCATGTTTCCtga
aatgattatttttggtgTTTGTATGAGAGCAATTGAACGGAGCGCGATGT
TTGTGGGTTCGAATAATAAATATGAAAAACTGGTACTTGATGCTTTTCTG
CTTGATTCTCAGCTGCTAAAAAGAAGGGTCATGGATGAGTGCTCTTCCCT
ACCTTTGAGTAGACAGACGGAAAAGGGAGCCATCACGTCACCCTCTAATG
CGGTTGCAAAgctaaaaaaaactttgaagctCATTTAAAACATACTGACT
TGCACATACTTTAGTTAAAGAAGTTTTCATATTTATTCCCCAGAAAGAAG
AAGTTCTTCAAGAGCTGCTCTCTAGATACAAGAAACTGGATGCAGATCAT
ATCTCTCTGAAAGAAGACCGTATTAAACAAACAAATGAATTCCAATCATC
GGAAAATAAACTGAAGCGAGAAGTAGAGAAATTGATGTCAAACCTCAAGT
CAAACCACAACGAACGAAACAATGTCAGTGAAACGCTTAAACAGCTGCTA
ACATCAAATAAGCAACTACAAAGTGAGCTTGAAGAAGTACAAGAAGCACT
TGGgaagaaagattttgaaattgaaacattaacAAGTGAAAGgtactaat
ttattttgagtTCTTACTCTATTTGGATTACAGGGAAAGTTTTAAGACTG
ATTTGCTTTCTACCAATTACCTACAAAATCATGCATTTACTCCAACTATG
TAATAATAGACTTAATATATTTATAATTTTAGGGAATTAcacatgaaaaa
tatcaaaggaATGGCTAAAGATCTTGATGGAATGGCCAAAAATCTAGACC
AAGTGGAAAATGACTATTGTAGTAAAGTAAGTGCTTTATCAAAGATCTGT
TGTGTTCCCCCTACTGTAtggctttttttaaattgattttatgTTAACTT
Ttctgttcgttcgtttgtcgtctgttaccagctttcctaggcattggctc
attagttttttttctgattttttgcacaatgatgcaaaatggcagtACCC
AAAATGTCAccgagcccgattttcaaacaaaagatttttacggtcaaaaa
tgccagaaatatgccggaaattgccgtttttgcagattttcattggactt
tttcctaatatttctttgatttttcacacaaaaacattattgataacaat
gcccaccatcaagcatgattcaattgtcatcaataaaactgatttttgca
accggaactttctatttctttttgcCTACTCACCTTCCTCTCTCAACAAT
CAATTATGAAATTTAAGTTTTGCATTTTCGCTAACCGCTATATCGTATGA
CTGATTGCTTTCATTCTTCTGCTTATTGCTATCTAATgataggtccattc
agcatctagcttgttttaaatgacagaaaatgaaatttttggtcccttga
atATCGCATAGAGAGGGTCTACTGTATTCATGCATAATGATGGTGTGAAT
GATGTATTTCTTTGTAtgtatttaattattttcaagaTTAATATCttgga
gaaaaatattttggaagaaaAGAAAAGGATTTGTGCATTGTCAACCGATA
AAAAGGACTTGGAAAAGCAATTGCAATCTAAAGAGGAGCTTATCAATAAT
GTCTCCCAGTCAAAGTAAGCATATCTATATAATTATACCCAAACGTATCT
GAAACCTTTCTTGTAGCGTTTtgattttcgctagcgattttacATTTCTG
TATATCTATTTCCAGGGATATGTTTTAGATTTGCATCAACATTCTTAGCC
TGAACACAGACGATATTGGTAATTCTTGCCCCCTGATTAGTGTCCGTGGC
TTTTATAGATCTTAACAATCGGTTGCGGAAAACTTACTTACGCATTCCTC
CACATTGAGTTTTAAGTGATCCGTTATCGTTTTAAATTTGTGGTATTTCA
AAGGATTTTAGAAGCGCTTTAACTATTTCTCAGGTTATGGAAGAAATTAG
ACTAGGAactcattttcaatttttacgagaaaaattttcaacaattttca
aagtcttcaaaGTCAATCAAATGTGTTGTGCGTAGATTTGTAATAATTGC
GCCAATTTGTAATATCCTTTGCGCAGTTTTGTGATTTTCGAGCTGCGTAT
AAATGTAATACTTCCCTGCGCAATTTTGTGATttggaatttattttttct
ttgcagTCGCAGGCATTTctaaaaaaagacttaaaaaatataatttaaaa
atttttattttcatgggGGGGAGGGCTCATAACCCTGCAACTATTTTTTC
CTGGTGAGAAGGAGCTGACCCAGGAGGACATTAGGATAGAAATCAACACT
GAAACGCTTCCTGAGCATGTCGTATTGCTCAGTATCTCATAAAACTGATT
CGGTTGCAAAGTGAAACAGAGTGAAAGgataatatattttatttctcaag
gTGTAGTTCCACCGTGTGTACTCTACCATTCCTGTTATTTTTCATCTGGC
CGCCAATTTATTTGTAAGAAGTGGAGTTTTTTCAGCTGTGACTTATTTAT
GCTTATCTTTAATCTTTGTAATTCCATCTTACAGAGAAAATTATATCACG
AACATAAAAGAGGAGAAGGAAAAACAagaaatgttattaaaagaaacTCA
CAAGACGGAACTGTCAAAAGTAAGAAATCCATGAGCCCTATCTTAAGACC
TTTTCCCACGTACCCTTTTCTATTGTATTGTAGACTTCTGTGATCTTTTC
TGGACCCACCAcacggaggtcctttaaattaactgatgttcgttcgtctg
ttaccagcttttttcGGGATTGCCTCATTAGTTTTCTcggattttttgca
cagtgatgcaaaatggtgatttccaaaaagtgacggagcctgattttcga
aaaaacaatttattggccaaatttaggccaaaaagtgcctaaaaatgggt
ttttttggactttgtgtgaaattgctttagttttttctgagtTCTTTGCA
TAGATAGAGGGCAATGTTCTCTAAAATGTGGCTcaagcagtttttttcgg
aattttttttttggccgtGAAAagcggattttcttatttggggaaattcc
catttttatgaaaaaagagcAATTGTCGCGACtgactttatatttttttc
tgattttttgcacagtaaTTTAAAATGGTAATTTTTGTAATCTGATGAAG
cccgatttcaaaaaataattgttttgggcaaatttgggccaaaagtCCCT
AACAAtgggtttttttttggactttgtgtgaaattgcttcttgcttgagg
gcaaggttctctaaaaagtaaCTCAAgctttttttttcggaaaatttttt
ttggtcgTGATATTGCACAACCTCGTTCCCGTGTATCCcaagctttattt
acgttactgattgacgccagagaataccctggtgttggctgatgcgagtt
ccccctctcagagggggaacttctcaaaacaatacgtNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTAATCTtgcgcgttcgaaaaccagccaatg
ccagggtattatctagcgctatcagtaagcataaaaaagctgataatgcg
cagggaacgaggttggatATTGCATAGTGATatataaaattgtaatattt
aatttctgatggagcccgattttcgaaaaaataattttttgggcaaattt
gggccaaaaagtgcctaacatGGGTTTTTTTCGGATTTGGGGAAAAGTAT
CGTCAGTCacgctaaaatatttattcacccCAGTATCTACGACTATAAGT
CATACGGCTTTAACTATATTTCACAGGTCGATATTTATTTGAGCTGTGAT
ATTCACGGTAATCTATTTAagctgctcactacacttttttactctgctat
ttgttatatttttatctgattctcatcatcaggtaggtccatttagcATG
TTACTTGTTAAATTCATACTTGATATCATAAAGTTAAGTTAAACACTGTT
AAAATCAGAATATAATTAAAAACATGTTATTTTGGACATAAAAACCACCT
AATTATTCACTCTGATTATCCAACTTTCTTCGTGatgaataatttcaaaa
atcattaattttttaaatcatttagATCAGGAAAACAATGGCAATAATGA
GGGAGGACtttgcaaagaaaaaagaagaattcgATCACAGGCTTTCCTTT
ATGGATGTATGTTTTTGTGTACATTACGTGAAATTAGTAAAGACGTTTTA
TTTCCATGTTGGAAACAGCAgttggagttatttaaaaactGGGCTAAAAC
TTTGTTTCTAAGCTTGTCAGTAATTGTTGGTTGATTTTTCGGCTTTTCCA
TTTTGTGTTTTATATTTTGTGTAAATTTCCTTAACAGGACCTCAGCCAGC
GGGTGAAAGATCTAAAAGCAGAAAAGCAAATCTATATGAAGAAAAATCAT
GACCAAGTAAGCCTTGACCCTTTTGTCTATTGTTTGTGAATCTTGTGTTT
TACTGTTAAAGAAATGACTAGAAAGTTACCAAATATTTTAGTGGAATAAA
AATCCCGAATCTAAAAGGCtcattcattttaattttcaggCCTCAAAACT
GGAAAGTTTTGTCGAACAAGTATCAGAGCTGCAGAACGAGTTGTCTACTA
TAATCGAAGAGCATAATGAGATAATACGGTAATCTAACttacttgaaatt
ctttttgactttatttacTAGCTACCTGTTTAAATATATCATAAAGTTTG
AAACGTGTCAGTGAGTCTCTGTGCCCTTCCCAACATAGCCAATCGAAGAA
GGTCAATTTTTGTAGGACATTAGTATaggatttttttctattttgatttc
aGAGAAAAAGATGAGTTGTATCTCGAGGAAAAACAAAAGCGCAAGAACAT
TGAATCCAGATACAAGGTCTAACTCTTGCTCTTATAGTCTGGCAGAAATA
AAATTTgaccttgaaaaaaattccgcgtaaactttcttggtaccgttgga
agcGGAATTCTATGCGGTTTAACATACTCATAGCCTCGCGTTGAGGTTCT
TTGGGAAAAATATTGGTGAAATAAAACATTAAGGACCCATCTTCGCTATA
AAATGCCTTGAAAAGTGCTATCTTGCAATGGTAGGTGCCTTTTAAACACT
CAatgtatacccctgtctcaaaaatctGGGGGGGGGGATTTCCCAACAAA
CATTTATGGAAACCACAATCAATTAAACAGTGTCATAAATGATATGAAAT
GGGTCAAGTGCATGGCGAAAGCCCTTGGGCGAAAGCACATGGTGATAGCG
CTGACTTTGGGTTTTTAGTGTAGCTGATGACCAGTACATCGTTCAAAAAC
GTATCTATTTTAGGGCAAAGAAGTACACTTCAGGcttgattttaccaaaa
attatcCCCAAGGGCCTCATCATGGGGCTCTGAGCAGCTCTAAGTATGAT
GATCTACATAAAATTCCgcttccaacggtaccaagaaagtttacgcggAA
TTCTTTTCTACGTTCACCCCTGTTTTATTGTAATTCAGCCAGATTATCTA
TGGCTCTTGTTCTATAAGTTAATCTCATCAGAGTAAAAATCTTCCATCAA
CAAGGAAAATCctaacaaaaaattattaatttcaTGTATGGCAAGAAAAA
GGGACTGATAGGTTAAGCTATAATTGATCACTCTTTCTTTCTCTCCTTCT
CATCAGAATGTTTTGAATAGGCAACAGAGAAAAGATGGAGGAGTTAAGGT
AAGTAAATTTAGATACGatgaaattttaactttttactttGCTAATTTGG
TGTTGTAACTTGAAGATCCAACATGCTGCATTGATGCAATATTTGTAGTT
TGtagaaaattttagatgtttttaATGGTTTTCCCTTTTAGTCACTGTTC
TCGACCACTGAAGAAAGCAACAACCTTGTGGACCATCATCCAAGACAAAG
TGCTGTACTTGAATATCAAAAATTAATTGTAAGAACTTTATATTTGTCCA
CTGAACCTATTGTTGCCAACCCAGGCAATCCCAAAAGTCTCAATGCAGGG
CTGAGGTCCTAATGCAGTCTAGATATGCCAAAAAATGGCACCTGTTTGag
tactttacagaccagaacagaacaattttttttctccaaggTATGCCATG
TTACATACCATTAGAAAGCATTTTTGTTTAGAAaaacaacctatatctga
aaatgaagccaataaaagttattgcggaaggttgtttgaaaaatgaGGTA
ATTGCTGACGTCAGTAAAAATTCAAGGACCACTCAAAAAGTTTAGTTCTA
TCAAATTAAATAGAGGACCTTTCAATGTCTAAATGGATAGCCTTGGTTGA
GAGTTAGACTTACTTGACATTGAATATCGCGTTTTTATGACTATTCAAAA
GCCTTAGGCAAAATTGGTTGCATCGGGCATGACCACGATAAGCACTTCTA
AGGCAAAATTTCCCACCCTAACCATACTCGAAAAGCTATTGTAAAATAAG
TTTGAATCTGATCTTAACTAATAGTATAGTAGTATCCGAAGGGTCCATTA
ttgaatttcactaaaataaacgTGTTTGGGTGGTCCTAGAGTTTTTGCTG
ACCTCAGCAATGACCCCTAAACTACAATTGTGCAAAGTGTCATGTTCTCT
TCACCCaacaaaactcaatttctaTGGGAAAACCTTGGTAGGGAAGTGCT
CGAATAATGATTTGCGGTAATAGTGCTCGAATGATTGCATATTTATTAAC
ACTTCCAGTTTATAAGTTATATTTATCTCTTTCTATGTGTTTTAACTCAT
CTCTACCTCTTTCAGGATGGAGAAGACACAAGAATGAGAGACATCCAGCA
CAAGTTTGAAGACCTGcatagaaagaaaagaaatggTTTCAGATGATGAG
CAATACACTggtttgaaatttgtttatatTATCTGATATTATACGGTTCT
TAGGTTGTGCAAGAGTTTGGTTCGTCTTAAAAGGTTTGGGAATCTAAATA
ACAAATGGAAGAAATCAAAGCAAAGCAATTAAACAGTGAAAAATACCTTA
TTCCCATTGATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023827XLOC_023827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039475-exon-sc0002119-1491911889:8872..8973TCONS_00039475-exon-sc0002119-1491911889:8872..8973Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:8872..8973TCONS_00039475-exon-sc0002119-1510915933:8872..8973Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:8872..8973TCONS_00039475-exon-sc0002119-1575043694:8872..8973Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:12625..12942TCONS_00039475-exon-sc0002119-1491911889:12625..12942Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:12625..12942TCONS_00039475-exon-sc0002119-1510915933:12625..12942Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:12625..12942TCONS_00039475-exon-sc0002119-1575043694:12625..12942Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:13251..13628TCONS_00039475-exon-sc0002119-1491911889:13251..13628Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:13251..13628TCONS_00039475-exon-sc0002119-1510915933:13251..13628Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:13251..13628TCONS_00039475-exon-sc0002119-1575043694:13251..13628Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:14031..14171TCONS_00039475-exon-sc0002119-1491911889:14031..14171Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:14031..14171TCONS_00039475-exon-sc0002119-1510915933:14031..14171Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:14031..14171TCONS_00039475-exon-sc0002119-1575043694:14031..14171Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:14515..14813TCONS_00039475-exon-sc0002119-1491911889:14515..14813Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:14515..14813TCONS_00039475-exon-sc0002119-1510915933:14515..14813Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:14515..14813TCONS_00039475-exon-sc0002119-1575043694:14515..14813Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:14954..15047TCONS_00039475-exon-sc0002119-1491911889:14954..15047Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:14954..15047TCONS_00039475-exon-sc0002119-1510915933:14954..15047Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:14954..15047TCONS_00039475-exon-sc0002119-1575043694:14954..15047Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:15708..15835TCONS_00039475-exon-sc0002119-1491911889:15708..15835Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:15708..15835TCONS_00039475-exon-sc0002119-1510915933:15708..15835Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:15708..15835TCONS_00039475-exon-sc0002119-1575043694:15708..15835Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:16756..16840TCONS_00039475-exon-sc0002119-1491911889:16756..16840Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:16756..16840TCONS_00039475-exon-sc0002119-1510915933:16756..16840Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:16756..16840TCONS_00039475-exon-sc0002119-1575043694:16756..16840Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:18447..18527TCONS_00039475-exon-sc0002119-1491911889:18447..18527Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:18447..18527TCONS_00039475-exon-sc0002119-1510915933:18447..18527Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:18447..18527TCONS_00039475-exon-sc0002119-1575043694:18447..18527Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:18911..18999TCONS_00039475-exon-sc0002119-1491911889:18911..18999Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:18911..18999TCONS_00039475-exon-sc0002119-1510915933:18911..18999Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:18911..18999TCONS_00039475-exon-sc0002119-1575043694:18911..18999Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:19174..19237TCONS_00039475-exon-sc0002119-1491911889:19174..19237Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:19174..19237TCONS_00039475-exon-sc0002119-1510915933:19174..19237Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:19174..19237TCONS_00039475-exon-sc0002119-1575043694:19174..19237Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:20028..20069TCONS_00039475-exon-sc0002119-1491911889:20028..20069Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:20028..20069TCONS_00039475-exon-sc0002119-1510915933:20028..20069Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:20028..20069TCONS_00039475-exon-sc0002119-1575043694:20028..20069Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:20213..20299TCONS_00039475-exon-sc0002119-1491911889:20213..20299Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:20213..20299TCONS_00039475-exon-sc0002119-1510915933:20213..20299Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:20213..20299TCONS_00039475-exon-sc0002119-1575043694:20213..20299Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1491911889:21137..21384TCONS_00039475-exon-sc0002119-1491911889:21137..21384Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1510915933:21137..21384TCONS_00039475-exon-sc0002119-1510915933:21137..21384Clytia hemisphaericaexon
TCONS_00039475-exon-sc0002119-1575043694:21137..21384TCONS_00039475-exon-sc0002119-1575043694:21137..21384Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002119supercontigsc0002119:8872..21384 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.190814	0	0	0	0	0.0102961	0	0	0	0	0	0	0	0	0	0.210664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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