|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039463 ID=TCONS_00039463|Name=TCONS_00039463|organism=Clytia hemisphaerica|type=transcript|length=788bp
ATTATAAAAAGTAAAGGACCCAAGACAGAGCCCTGAGGCACCCTATGTCT
TATCGGTATGTATTTTGAAGATGTATTTCTGATTTCCACACGTTGCTCTC
GACCTGATAGGTATGATTTGAGAATATTTAGGGCAGGCCCTCTTATTCCA
TAGTGTTCAAGTTTGCAAAGGAGGATATCGTGATCAACAGTGTCAaatgc
tttttttaaatcaatgaaAACCCCTGCAGCAATCTGTCCAGAGTCCAAAG
TTTTTCTTACCAGTTCAGTGAGAGCAACTACAGCATGATTAGTACTGTGG
CCTTTCCTAAAGCCGAATTGTTTAGAtggaaaaatattattatctTCAAA
GAAGCGAGAAAGTCTAAAATgtagaagtttttcaaaaattttatttatat
tagAAAGTAAAGAAATAGGCCTGTAATTGCCAACATCAAGTTTAGAGTCT
TTTTTGTGTAGAGGTTTGACTGTTGCTCTCTTCAAACAGTCTGGATAAAC
TCCTTcatagatagaaaaattaaaaatgtgcGCAAGGACAGTTCTTGCTG
TAGGAGCTATCATCTTTAGGAAAGAAGTTGGGATACTGGATGGGCCTGAA
GCTTTAAGTCCGTCGAGTTCATTGATCAACTTAAGAACAGATTCAGGAGT
AATCCTGTTGAGATAAATAGAGTATAATTTCTGAACACCTAAATAATCTG
AAAATGTTTTAGCAGTCCTAGagatttgttgttttgttttctctGCAATA
GACCCATAGAAATTGTTGAAAACTTCAGCCATGTCTTT Run BLAST on NCBI protein sequence of TCONS_00039463-protein >TCONS_00039463-protein ID=TCONS_00039463-protein|Name=TCONS_00039463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
KDMAEVFNNFYGSIAEKTKQQISRTAKTFSDYLGVQKLYSIYLNRITPES
VLKLINELDGLKASGPSSIPTSFLKMIAPTARTVLAHIFNFSIYEGVYPD
CLKRATVKPLHKKDSKLDVGNYRPISLLSNINKIFEKLLHFRLSRFFEDN
NIFPSKQFGFRKGHSTNHAVVALTELVRKTLDSGQIAAGVFIDLKKAFDT
VDHDILLCKLEHYGIRGPALNILKSYLSGREQRVEIRNTSSKYIPIRHRV
PQGSVLGPLLFI Run BLAST on NCBI transcript from alignment at sc0002117:15691..16478 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039463 ID=TCONS_00039463|Name=TCONS_00039463|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at sc0002117:15691..16478 (Clytia hemisphaerica)
AAAGACATGGCTGAAGTTTTCAACAATTTCTATGGGTCTATTGCagagaa
aacaaaacaacaaatctCTAGGACTGCTAAAACATTTTCAGATTATTTAG
GTGTTCAGAAATTATACTCTATTTATCTCAACAGGATTACTCCTGAATCT
GTTCTTAAGTTGATCAATGAACTCGACGGACTTAAAGCTTCAGGCCCATC
CAGTATCCCAACTTCTTTCCTAAAGATGATAGCTCCTACAGCAAGAACTG
TCCTTGCgcacatttttaatttttctatctatgAAGGAGTTTATCCAGAC
TGTTTGAAGAGAGCAACAGTCAAACCTCTACACAAAAAAGACTCTAAACT
TGATGTTGGCAATTACAGGCCTATTTCTTTACTTTctaatataaataaaa
tttttgaaaaacttctacATTTTAGACTTTCTCGCTTCTTTGAagataat
aatatttttccaTCTAAACAATTCGGCTTTAGGAAAGGCCACAGTACTAA
TCATGCTGTAGTTGCTCTCACTGAACTGGTAAGAAAAACTTTGGACTCTG
GACAGATTGCTGCAGGGGTTttcattgatttaaaaaaagcattTGACACT
GTTGATCACGATATCCTCCTTTGCAAACTTGAACACTATGGAATAAGAGG
GCCTGCCCTAAATATTCTCAAATCATACCTATCAGGTCGAGAGCAACGTG
TGGAAATCAGAAATACATCTTCAAAATACATACCGATAAGACATAGGGTG
CCTCAGGGCTCTGTCTTGGGTCCTTTACTTTTTATAAT Coding sequence (CDS) from alignment at sc0002117:15691..16478 >TCONS_00039463 ID=TCONS_00039463|Name=TCONS_00039463|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0002117:15691..16478 (Clytia hemisphaerica)
AAAGACATGGCTGAAGTTTTCAACAATTTCTATGGGTCTATTGCagagaa
aacaaaacaacaaatctCTAGGACTGCTAAAACATTTTCAGATTATTTAG
GTGTTCAGAAATTATACTCTATTTATCTCAACAGGATTACTCCTGAATCT
GTTCTTAAGTTGATCAATGAACTCGACGGACTTAAAGCTTCAGGCCCATC
CAGTATCCCAACTTCTTTCCTAAAGATGATAGCTCCTACAGCAAGAACTG
TCCTTGCgcacatttttaatttttctatctatgAAGGAGTTTATCCAGAC
TGTTTGAAGAGAGCAACAGTCAAACCTCTACACAAAAAAGACTCTAAACT
TGATGTTGGCAATTACAGGCCTATTTCTTTACTTTctaatataaataaaa
tttttgaaaaacttctacATTTTAGACTTTCTCGCTTCTTTGAagataat
aatatttttccaTCTAAACAATTCGGCTTTAGGAAAGGCCACAGTACTAA
TCATGCTGTAGTTGCTCTCACTGAACTGGTAAGAAAAACTTTGGACTCTG
GACAGATTGCTGCAGGGGTTttcattgatttaaaaaaagcattTGACACT
GTTGATCACGATATCCTCCTTTGCAAACTTGAACACTATGGAATAAGAGG
GCCTGCCCTAAATATTCTCAAATCATACCTATCAGGTCGAGAGCAACGTG
TGGAAATCAGAAATACATCTTCAAAATACATACCGATAAGACATAGGGTG
CCTCAGGGCTCTGTCTTGGGTCCTTTACTTTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039463-exon-sc0002117-1491911889:15691..16478 | TCONS_00039463-exon-sc0002117-1491911889:15691..16478 | Clytia hemisphaerica | exon |
| TCONS_00039463-exon-sc0002117-1510915933:15691..16478 | TCONS_00039463-exon-sc0002117-1510915933:15691..16478 | Clytia hemisphaerica | exon |
| TCONS_00039463-exon-sc0002117-1575043694:15691..16478 | TCONS_00039463-exon-sc0002117-1575043694:15691..16478 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002117 | supercontig | sc0002117:15691..16478 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
|
