TCONS_00039462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039462
Unique NameTCONS_00039462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039462 ID=TCONS_00039462|Name=TCONS_00039462|organism=Clytia hemisphaerica|type=transcript|length=718bp
TTTTGCTAGCTCGCAGCAATTTAGCAAGTAAATTTCTGTGTTTTTTGAAC
TTGTCATGCTTTAGTGCTTTAAGGGTTTGATCTTTTGCCTTCATAaattt
cttatataatttgtttttggAAGAGATTGATTTGAGGAGACCTTTTGTGA
TCCAGGGTTTTTTAGGTATGCATGCCTTCTTCCAAGTAGTTTTTATAGGG
GCATGTGAATCTATAACCGAATTGGTTTTAGTAATAAAAGTATTGAGCTT
GTCAGAAGGAAATTTCCCATGAAGAGTAGTTGCCCAGTCGATAGAGAGAA
AATCCATCAAGAAATCGTTTATGgtgaaatttctgaaatctcTCTTAGAC
GATTTGACTTGAAGAGACTTAGAAGGTTTCAGATCCAATTTAAGTAACTG
AGGCAGATGGTCCGAGATACTGCATATGATATTGCATGCCTGTGGTTTTG
CTGTGATGAAGTTCGTAAAAATGTTATCTATCAAAGTTTTTGAATGAGGA
GTTATTCTGGTAGGCCTGGTAATGGTTGGAATGAAACAGTGAGTTAAATT
TGTAGTGAGAAACTCATCAGTGGGCTGTTTTGAATCAGCCATCAGTAAAT
CAAAGTTGAAATCTCCCATGAtaattgcttttttattttctgaaattatT
TTGTCGAGAAGATTTGAGTAGAGAGAAAGGAAATTTTCAGAGTCAGCATT
TGGATGTTTGTATATACA
Run BLAST on NCBI

protein sequence of TCONS_00039462-protein

>TCONS_00039462-protein ID=TCONS_00039462-protein|Name=TCONS_00039462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
CIYKHPNADSENFLSLYSNLLDKIISENKKAIIMGDFNFDLLMADSKQPT
DEFLTTNLTHCFIPTITRPTRITPHSKTLIDNIFTNFITAKPQACNIICS
ISDHLPQLLKLDLKPSKSLQVKSSKRDFRNFTINDFLMDFLSIDWATTLH
GKFPSDKLNTFITKTNSVIDSHAPIKTTWKKACIPKKPWITKGLLKSISS
KNKLYKKFMKAKDQTLKALKHDKFKKHRNLLAKLLRASK
Run BLAST on NCBI

transcript from alignment at sc0002117:14775..15492

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039462 ID=TCONS_00039462|Name=TCONS_00039462|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at sc0002117:14775..15492 (Clytia hemisphaerica)
TGTATATACAAACATCCAAATGCTGACTCTGAAAATTTCCTTTCTCTCTA
CTCAAATCTTCTCGACAAAataatttcagaaaataaaaaagcaattaTCA
TGGGAGATTTCAACTTTGATTTACTGATGGCTGATTCAAAACAGCCCACT
GATGAGTTTCTCACTACAAATTTAACTCACTGTTTCATTCCAACCATTAC
CAGGCCTACCAGAATAACTCCTCATTCAAAAACTTTGATAGATAACATTT
TTACGAACTTCATCACAGCAAAACCACAGGCATGCAATATCATATGCAGT
ATCTCGGACCATCTGCCTCAGTTACTTAAATTGGATCTGAAACCTTCTAA
GTCTCTTCAAGTCAAATCGTCTAAGAgagatttcagaaatttcacCATAA
ACGATTTCTTGATGGATTTTCTCTCTATCGACTGGGCAACTACTCTTCAT
GGGAAATTTCCTTCTGACAAGCTCAATACTTTTATTACTAAAACCAATTC
GGTTATAGATTCACATGCCCCTATAAAAACTACTTGGAAGAAGGCATGCA
TACCTAAAAAACCCTGGATCACAAAAGGTCTCCTCAAATCAATCTCTTcc
aaaaacaaattatataagaaattTATGAAGGCAAAAGATCAAACCCTTAA
AGCACTAAAGCATGACAAGTTCAAAAAACACAGAAATTTACTTGCTAAAT
TGCTGCGAGCTAGCAAAA

Coding sequence (CDS) from alignment at sc0002117:14775..15492

>TCONS_00039462 ID=TCONS_00039462|Name=TCONS_00039462|organism=Clytia hemisphaerica|type=CDS|length=717bp|location=Sequence derived from alignment at sc0002117:14775..15492 (Clytia hemisphaerica)
TGTATATACAAACATCCAAATGCTGACTCTGAAAATTTCCTTTCTCTCTA
CTCAAATCTTCTCGACAAAataatttcagaaaataaaaaagcaattaTCA
TGGGAGATTTCAACTTTGATTTACTGATGGCTGATTCAAAACAGCCCACT
GATGAGTTTCTCACTACAAATTTAACTCACTGTTTCATTCCAACCATTAC
CAGGCCTACCAGAATAACTCCTCATTCAAAAACTTTGATAGATAACATTT
TTACGAACTTCATCACAGCAAAACCACAGGCATGCAATATCATATGCAGT
ATCTCGGACCATCTGCCTCAGTTACTTAAATTGGATCTGAAACCTTCTAA
GTCTCTTCAAGTCAAATCGTCTAAGAgagatttcagaaatttcacCATAA
ACGATTTCTTGATGGATTTTCTCTCTATCGACTGGGCAACTACTCTTCAT
GGGAAATTTCCTTCTGACAAGCTCAATACTTTTATTACTAAAACCAATTC
GGTTATAGATTCACATGCCCCTATAAAAACTACTTGGAAGAAGGCATGCA
TACCTAAAAAACCCTGGATCACAAAAGGTCTCCTCAAATCAATCTCTTcc
aaaaacaaattatataagaaattTATGAAGGCAAAAGATCAAACCCTTAA
AGCACTAAAGCATGACAAGTTCAAAAAACACAGAAATTTACTTGCTAAAT
TGCTGCGAGCTAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023818XLOC_023818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039462-exon-sc0002117-1491911889:14775..15492TCONS_00039462-exon-sc0002117-1491911889:14775..15492Clytia hemisphaericaexon
TCONS_00039462-exon-sc0002117-1510915933:14775..15492TCONS_00039462-exon-sc0002117-1510915933:14775..15492Clytia hemisphaericaexon
TCONS_00039462-exon-sc0002117-1575043694:14775..15492TCONS_00039462-exon-sc0002117-1575043694:14775..15492Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039462-proteinTCONS_00039462-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002117supercontigsc0002117:14775..15492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141637	0.29116	0.716149	0.237147	0	0.288999	0.287887	0.260564	0	0.56553	0.0829588	0.26143	0.0658411	0	0.0462766	0.0728475	0	0	0	0.147773	0.169368	0.0986125	0	0.0355991	0	0	0.126288	0	0.192937	0.02778
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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