TCONS_00039458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039458
Unique NameTCONS_00039458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039458 ID=TCONS_00039458|Name=TCONS_00039458|organism=Clytia hemisphaerica|type=transcript|length=670bp
caaGTATATAAAGGTGCAAAATTCAAGTACATTCAAGTATATTTTGAACT
TTACGTATGGTGCTTCGTTAGAATAGGGATATCCGGATCCTCAATTTGCC
AGAAATTTTATGGGTTtacctttcttaaaaatattatgACAAAATTGTGT
GCACAAAATAATGTCACTGATGCCAgaattattttgacattttctcaaat
taaacAACAGATCAAAATGTGCTTTAGAAACTAGTGAATTTATGACACCA
TGGCGTACTACAGCGGTTGTCTAATTTCTAGAATTATATTATTACTAAAC
AGCTTACGTAGCAAGGTTGTCAAATCAGAAGGTTTGGTTGCGAGCGAAGA
GGGTAGAATATCTTTTGCAATTCTAAGtagtaggaagaaattttccgATA
TTTCCAGAATGTTTTCCAGAGACTatcagaaatattttctttaaatatcA
GACTTCAAGACTTTTAAGACATTTCCAGTTCTAGCAGACAAAGAAACCTT
GTAATTAAGAGCTTAgtcaattcagtcaaatcaaaaactttgctgaaaaa
ttgacattttcccaattttcaactTCTTATTTCTAGAATCATTTCATGGC
TCACTGCTCCTTGAAGATCTATTTTCTAGCAAGAGTTTTTAACATAGAAA
ATTGGCGAGCACTTTTCATG
Run BLAST on NCBI

transcript from alignment at sc0002115:22693..23362

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039458 ID=TCONS_00039458|Name=TCONS_00039458|organism=Clytia hemisphaerica|type=transcript|length=670bp|location=Sequence derived from alignment at sc0002115:22693..23362 (Clytia hemisphaerica)
CATGAAAAGTGCTCGCCAATTTTCTATGTTAAAAACTCTTGCTAGAAAAT
AGATCTTCAAGGAGCAGTGAGCCATGAAATGATTCTAGAAATAAGAagtt
gaaaattgggaaaatgtcaatttttcagcaaagtttttgatttgactgaa
ttgacTAAGCTCTTAATTACAAGGTTTCTTTGTCTGCTAGAACTGGAAAT
GTCTTAAAAGTCTTGAAGTCTgatatttaaagaaaatatttctgatAGTC
TCTGGAAAACATTCTGGAAATATcggaaaatttcttcctactaCTTAGAA
TTGCAAAAGATATTCTACCCTCTTCGCTCGCAACCAAACCTTCTGATTTG
ACAACCTTGCTACGTAAGCTGTTTAGTAATAATATAATTCTAGAAATTAG
ACAACCGCTGTAGTACGCCATGGTGTCATAAATTCACTAGTTTCTAAAGC
ACATTTTGATCTGTTgtttaatttgagaaaatgtcaaaataattcTGGCA
TCAGTGACATTATTTTGTGCACACAATTTTGTcataatatttttaagaaa
ggtaAACCCATAAAATTTCTGGCAAATTGAGGATCCGGATATCCCTATTC
TAACGAAGCACCATACGTAAAGTTCAAAATATACTTGAATGTACTTGAAT
TTTGCACCTTTATATACttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023815XLOC_023815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039458-exon-sc0002115-1491911889:22693..23362TCONS_00039458-exon-sc0002115-1491911889:22693..23362Clytia hemisphaericaexon
TCONS_00039458-exon-sc0002115-1510915933:22693..23362TCONS_00039458-exon-sc0002115-1510915933:22693..23362Clytia hemisphaericaexon
TCONS_00039458-exon-sc0002115-1575043694:22693..23362TCONS_00039458-exon-sc0002115-1575043694:22693..23362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002115supercontigsc0002115:22693..23362 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.621426	0.715818	1.64857	2.64526	1.47776	1.43829	0.947179	1.67409	1.22084	0.67727	1.43014	1.27589	0.883178	0.272595	0.193412	0.429591	1.13026	0.285061	0	0.556286	0.757655	1.15776	0.221142	0.561444	0.677468	1.83927	0.205079	0	0.828686	0.351098
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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