TCONS_00039455 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039455
Unique NameTCONS_00039455
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039455 ID=TCONS_00039455|Name=TCONS_00039455|organism=Clytia hemisphaerica|type=transcript|length=817bp
ATTCCCATATGAATACTACTTCATCGTTGTGtttcaaataatcaaaattg
aaataaaaatgtcttttGATGATTGAATTCAATTCCTATCTTtctttccc
aaatctctgattACACCAAcaacgaaagaaaaaagatttaagaAACTCAG
CGAGGAGGCAAGAACCCTTAACGAAGAATAAACACATAAAGACTATAAAT
GGCGAGTGAGAGAGAGTCCTAGGACTGTACTCTTTCTCAAAAAGATCTCT
AGTCCTACTGAGACATAAAATATTGTATATAAATAACTAATTTGTAAAGT
AAGGTTGACGTTTACAGTATTAGCCTTTGTAGCTACCTTTTTTGTCAACG
TTAAATAAACAATTACGTAACCTTCATCATCATCCTCATGTTTAAATTCA
AACCCTTGTAGCAAAATAGGACAGTTAAATTGTGTAGGTGATTCTACTTC
CTGTGACTGCTTTCCTTCTTCAATGTATGGGTCCACATTTTGACAACTAA
ATTGACTCGCTTATTTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACA
CCTGAGAAAGACGACGCGGAAGAAGATGCGGCACTGGAGGAAAGGGCTAC
AACACCTGAGAAAGACGACGCGGAAGAAGGTATGTAGTAAATAAATAGTA
ATCTGCACAGGCTTGTTGGCTTGTTGTTAATCGCGATAATTATGATTTAT
AACACATCCaacttttggacctaccttgaggTTCTATATTGGGCAGAGAT
AGGCAATTTTTTTCACCGTCGAAAATGTaagatttaagaaaaataatgcc
aagtttttagttttgtt
Run BLAST on NCBI

transcript from alignment at sc0002115:916..3876-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039455 ID=TCONS_00039455|Name=TCONS_00039455|organism=Clytia hemisphaerica|type=transcript|length=2961bp|location=Sequence derived from alignment at sc0002115:916..3876- (Clytia hemisphaerica)
ATTCCCATATGAATACTACTTCATCGTTGTGTTTCAAATAATCAAAATTG
AAATAAAAATGTCTTTTGATGATTGAATTCAATTCCTATCTTTCTTTCCC
AAATCTCTGATTACACCAACAACGAAAGAAAAAAGATTTAAGAAACTCAG
CGAGGAGGCAAGAACCCTTAACGAAGAATAAACACATAAAGACTATAAAT
GGCGAGTGAGAGAGAGTCCTAGGACTGTACTCTTTCTCAAAAAGATCTCT
AGTCCTACTGAGACATAAAATATTGTATATAAATAACTAATTTGTAAAGT
AAGGTTGACGTTTACAGTATTAGCCTTTGTAGCTACCTTTTTTGTCAACG
TTAAATAAACAATTACGTAACCTTCATCATCATCCTCATGTTTAAATTCA
AACCCTTGTAGCAAAATAGGACAGTTAAATTGTGTAGGTGATTCTACTTC
CTGTGACTGCTTTCCTTCTTCAATGTATGGGTCCACATTTTGACAACTAA
ATTGACTCGCTTATTTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACA
CCTGAGAAAGACGACGCGGAAGAAGGTATGTAGTAAATAAATAGTAATCT
TACAGGCTTGTTGGCTTGTTTTTAATCGCGATAATTATGATTTATAACAC
ATCCAACTTTTGGACCTACCTTGAGGTTCTATATTGGGCAGAGATAGGCA
ATTTTTTTCACCGTCGAAAATGTAAGATTTAAGAAAAATAATGCCAAGTT
TTTAGTTTTGTTCAAAATGTCATTTTTTCATCATNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTAAATTCAAA
CCCTTGTAGCAAAATAGGACAGTTAAATTGTGTAGGTGATTCTACTTCCT
GTGACTGCTTTCCTTCTTCAATGTATGGGTCCACATTTTGACAACTAAAT
TGACTCGCTTATTTTCTAGATGCGGCACTGGAGGAAAGGGCTACAACACC
TGAGAAAGACGACGCGGAAGAAGGTATGTAGTAAATAAATAGTAATCTGC
ACAGGCTTGTTGGCTTGTTGTTAATCGCGATAATTATGATTTATAACACA
TCCAACTTTTGGACCTACCTTGAGGTTCTATATTGGGCAGAGATAGGCAA
TTTTTTTCACCGTCGAAAATGTAAGATTTAAGAAAAATAATGCCAAGTTT
TTAGTTTTGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023812XLOC_023812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039455-exon-sc0002115-1575043694:3302..3876TCONS_00039455-exon-sc0002115-1575043694:3302..3876Clytia hemisphaericaexon
TCONS_00039455-exon-sc0002115-1575043694:916..1157TCONS_00039455-exon-sc0002115-1575043694:916..1157Clytia hemisphaericaexon
TCONS_00039455-exon-sc0002115-1510915933:3302..3876TCONS_00039455-exon-sc0002115-1510915933:3302..3876Clytia hemisphaericaexon
TCONS_00039455-exon-sc0002115-1510915933:916..1157TCONS_00039455-exon-sc0002115-1510915933:916..1157Clytia hemisphaericaexon
TCONS_00039455-exon-sc0002115-1491911889:3302..3876TCONS_00039455-exon-sc0002115-1491911889:3302..3876Clytia hemisphaericaexon
TCONS_00039455-exon-sc0002115-1491911889:916..1157TCONS_00039455-exon-sc0002115-1491911889:916..1157Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002115supercontigsc0002115:916..3876 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.613007	0.448333	0.954356	1.27321	7.94772	7.29035	8.62731	11.3964	5.79178	7.4383	9.1606	6.32801	3.72018	4.69171	2.045	2.24129	2.70357	2.71211	2.44365	3.66518	3.7784	5.4205	2.19644	2.65989	7.37567	11.0857	5.28347	5.04597	2.21127	1.68236
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039455 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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