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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039453 ID=TCONS_00039453|Name=TCONS_00039453|organism=Clytia hemisphaerica|type=transcript|length=195bp
CCATCAAGCATGGCGGACGTCTCGTGCTCGGAATCGTATCCACTTCCAAA
TGCCCCACATTTTCTAGAACCGAAGCAAATCATTTCTTCATCTCAACAAC
AAAAGTCTCTACCAGCTAAAAGGTCTACACACACCCGGTCAGATGAAGGA
AAACGACGGAGGAATAAGAAGAAGAGTTGCAAAAGCAAATCAAAG Run BLAST on NCBI transcript from alignment at sc0002115:28253..29971+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039453 ID=TCONS_00039453|Name=TCONS_00039453|organism=Clytia hemisphaerica|type=transcript|length=1719bp|location=Sequence derived from alignment at sc0002115:28253..29971+ (Clytia hemisphaerica)
CCATCAAGCATGGCGGACGTCTCGTGCTCGGAATCGTATCCACTTCCAAA
TGCCCCACATTTTCTAGAACCGAAGCAAATCATTTCTTCATCTCAACAAC
AAAAGTCTCTACCAGCTAAAAGGTAAATATACATATATATATATGTTTTC
TAAGCATTATATTTTGCCTTTgttgtttaacttttttgtttttttctcac
aTCTCTCCTTTTTTTGCTTCTTGGTCAGTTTTTTGGACCTAATCTCAGAT
GACCAATAAACTAGGGGTGGGGGATGTATGATTAGTAGATAACGTGCTCC
TGAAAATTCTTAAATGGAATTTATAATTCACACGTAGAAGATTTTACAAT
CTTCCCAAATCAGCCCTCTAAGTTAGGTTATAAAATTAAATTcacgaccc
tgccgattccccggACAATATGGGGCAAATGTCCGTGGAGcgaaaaaata
tttccatccCCAGACAAACGAAGCGCGCTGTCGGATGAGTGAACACATGG
TTGCGAGTTACGGTCGACTATATTTGCATGAAAGCGCCTGGACATCACTA
TGATGGCGAAATTGACGGACGCCAATGCGATCGCCCAAATGTTTTAGTAC
ATCACACAGACCGCGTGTTCAGTCCGGGGtaagtttcaaaaaataaagcg
gcaatcaaaaatatgttcaatttgggtcctaaaacatcttcaaatccagt
cggtagGTCAGCCGGTAGAAaattttgtcggatttttaagatctagtaaa
tcccgatgaatcaagtcggcaatcaacagaaacttatgccgccatcttta
atttgccaaactaaatgtgTGCCTGCATGTGTTAACCTTAAAGCAGCCCT
TATTCTTGGCCCCTAGNcatctttaatttgccaaactaaatgtgTGCCTG
AATATGTTAACCTTAAAGCGGCCCTTATTCTTGGCCCCTAgggtattggc
cctaccgcgttgctgaatttgacatgaaaatttcaataagggtacatgaa
aaaacttgaacgggactcaatgtgggttaagtaaacaaaataataatgat
tcaaagacaTGCCATTATGGGAAAGATCCGAACCTGCAAACAGCGCCCAA
AAAACCTGACGATTGTACCGACTTTCCGAATAGGGTTTTCTTGTTTATTC
TGTGACAAATGTTGTCAACCAAGATCACAGCATATAAATTTAatgtttat
accattagccaaactggagttatttaaaaaacaaattttgctgacgtcag
cattttttggttttttcagtttttcgcaaaattggcaaaacctaaattta
agtaactgGTTTTCAAGTTTAACATCGTAATGCGCTTTTTTAAAGGTATC
AGTTATTATACTAGGAGGGGTGGAACTGCTTCTGAAAAATTAACGAAATT
TGAATTTACCCAAGAGAAatgcacattcaactttttcaagcaTTGCCGGT
TCCAATGAGGTACGCGATTACGCTATAGTATAAGGACTAAAAACACAACA
GATATCTATACTTCCACTCACTAGAACAGTTTTTTTCGATCTAGCAAAGA
TCCACTGATCAAAAACTGTCCTTAAATATAGGATCTTGTGCCTCGTTGTA
TACAGGAATCACAAtttaataatctttttgttCATTCTCTTGCCAGGTCT
ACACACACCCGGTCAGATGAAGGAAAACGACGGAGGAATAAGAAGAAGAG
TTGCAAAAGCAAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039453-exon-sc0002115-1491911889:28253..28374 | TCONS_00039453-exon-sc0002115-1491911889:28253..28374 | Clytia hemisphaerica | exon |
| TCONS_00039453-exon-sc0002115-1510915933:28253..28374 | TCONS_00039453-exon-sc0002115-1510915933:28253..28374 | Clytia hemisphaerica | exon |
| TCONS_00039453-exon-sc0002115-1575043694:28253..28374 | TCONS_00039453-exon-sc0002115-1575043694:28253..28374 | Clytia hemisphaerica | exon |
| TCONS_00039453-exon-sc0002115-1491911889:29899..29971 | TCONS_00039453-exon-sc0002115-1491911889:29899..29971 | Clytia hemisphaerica | exon |
| TCONS_00039453-exon-sc0002115-1510915933:29899..29971 | TCONS_00039453-exon-sc0002115-1510915933:29899..29971 | Clytia hemisphaerica | exon |
| TCONS_00039453-exon-sc0002115-1575043694:29899..29971 | TCONS_00039453-exon-sc0002115-1575043694:29899..29971 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002115 | supercontig | sc0002115:28253..29971 + |
Blast
The following BLAST results are available for this feature:
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