TCONS_00039450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039450
Unique NameTCONS_00039450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039450 ID=TCONS_00039450|Name=TCONS_00039450|organism=Clytia hemisphaerica|type=transcript|length=411bp
TGGAAATGTTGGACTGACTGATGACATTTTTAGCTCTTCAATGTCATTCT
TCTCAACTAAGGAAGCTTGAGCTAGATGAAACCAAAGACTTGATTCCCAA
ACTCAACGTTTCTGATGAACACCGAAAAACTTCGAAGAACAAACTTAAAT
GAACCGTAGGCATATTTAATGATGTATCTATTCAAAGATCCAAGTGTTAA
AGATATTGAAAGCCTGGATGCTGGTTTAACAATTGTGTGTGATGAATTAT
TGAAGGTCTGGGACACCCTCTGGATTATTTACATTCACGAGGAGAAATTG
TGCACGGCGTGATGTCCAACGCCCAAGTGGATTCTTGTATTACTACAGAT
AAACTTTAAATTAACTTATAACTGACAGATGCAGTGAGGAAAATATACTA
GGATGATCTAT
Run BLAST on NCBI

transcript from alignment at sc0002113:28985..29395

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039450 ID=TCONS_00039450|Name=TCONS_00039450|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0002113:28985..29395 (Clytia hemisphaerica)
ATAGATCATCCTAGTATATTTTCCTCACTGCATCTGTCAGTTATAAGTTA
ATTTAAAGTTTATCTGTAGTAATACAAGAATCCACTTGGGCGTTGGACAT
CACGCCGTGCACAATTTCTCCTCGTGAATGTAAATAATCCAGAGGGTGTC
CCAGACCTTCAATAATTCATCACACACAATTGTTAAACCAGCATCCAGGC
TTTCAATATCTTTAACACTTGGATCTTTGAATAGATACATCATTAAATAT
GCCTACGGTTCATTTAAGTTTGTTCTTCGAAGTTTTTCGGTGTTCATCAG
AAACGTTGAGTTTGGGAATCAAGTCTTTGGTTTCATCTAGCTCAAGCTTC
CTTAGTTGAGAAGAATGACATTGAAGAGCTAAAAATGTCATCAGTCAGTC
CAACATTTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023808XLOC_023808Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039450-exon-sc0002113-1491911889:28985..29395TCONS_00039450-exon-sc0002113-1491911889:28985..29395Clytia hemisphaericaexon
TCONS_00039450-exon-sc0002113-1510915933:28985..29395TCONS_00039450-exon-sc0002113-1510915933:28985..29395Clytia hemisphaericaexon
TCONS_00039450-exon-sc0002113-1575043694:28985..29395TCONS_00039450-exon-sc0002113-1575043694:28985..29395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002113supercontigsc0002113:28985..29395 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.16798	0.648743	0	0.497242	2.55044	2.11954	5.66894	3.26861	1.51605	5.0148	4.16988	2.38904	2.9049	2.50133	1.76271	3.12097	1.787	1.17085	4.98573	3.05356	1.58034	3.47841	2.05555	1.57027	0.699869	0	10.2055	8.33055	8.74619	6.92754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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