TCONS_00039438 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039438
Unique NameTCONS_00039438
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039438 ID=TCONS_00039438|Name=TCONS_00039438|organism=Clytia hemisphaerica|type=transcript|length=432bp
cctttACTCGTTCATACTTAATTTTCTTGATCAGTTTGTATTGGGATTCA
GGAACTATAACATCTGGTAAATCATTAGAAGATGATCTGAAACAAACTCC
AATGGTCAGAACATATGACACCAAATTTCCAAATCCTTCTGTTTTGAAAT
GTCTTTTGTACTGTTTTCACAATTCAGGATCCTTTGACAAACGATGGAAT
TTAATAGGGTTACCATTAGAGTCTTTCACAAAAACACAAGCTGGAACTGC
AGTTACTTTTCATTGTGGATTGTGAAAACAACTCCAATCTGCTAAAAATT
TCAATCTTCTCTAACTTTTCCTCTCAATCTTGCCTTGTTTTGGTTTAGAA
TTTTCGCAAGATGGCGCATATCATCGAAAAAGTCCCTACAGCTAGTTACC
AGGCCCTTTTACGGAATGTGGCTAATGAAGTT
Run BLAST on NCBI

transcript from alignment at sc0002108:29041..29472

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039438 ID=TCONS_00039438|Name=TCONS_00039438|organism=Clytia hemisphaerica|type=transcript|length=432bp|location=Sequence derived from alignment at sc0002108:29041..29472 (Clytia hemisphaerica)
AACTTCATTAGCCACATTCCGTAAAAGGGCCTGGTAACTAGCTGTAGGGA
CTTTTTCGATGATATGCGCCATCTTGCGAAAATTCTAAACCAAAACAAGG
CAAGATTGAGAGGAAAAGTTAGAGAAGATTGAAATTTTTAGCAGATTGGA
GTTGTTTTCACAATCCACAATGAAAAGTAACTGCAGTTCCAGCTTGTGTT
TTTGTGAAAGACTCTAATGGTAACCCTATTAAATTCCATCGTTTGTCAAA
GGATCCTGAATTGTGAAAACAGTACAAAAGACATTTCAAAACAGAAGGAT
TTGGAAATTTGGTGTCATATGTTCTGACCATTGGAGTTTGTTTCAGATCA
TCTTCTAATGATTTACCAGATGTTATAGTTCCTGAATCCCAATACAAACT
GATCAAGAAAATTAAGTATGAACGAGTaaagg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023798XLOC_023798Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039438-exon-sc0002108-1491911889:29041..29472TCONS_00039438-exon-sc0002108-1491911889:29041..29472Clytia hemisphaericaexon
TCONS_00039438-exon-sc0002108-1510915933:29041..29472TCONS_00039438-exon-sc0002108-1510915933:29041..29472Clytia hemisphaericaexon
TCONS_00039438-exon-sc0002108-1575043694:29041..29472TCONS_00039438-exon-sc0002108-1575043694:29041..29472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002108supercontigsc0002108:29041..29472 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9026	0.744813	0	0	4.03157	3.15017	3.1656	3.21023	0.396707	0.775769	0.565184	0.302562	0.378891	1.60996	0.68746	1.55451	0	0.467829	1.47869	2.66741	1.51942	2.00583	2.69275	3.34133	1.52272	2.41994	4.35231	2.31935	5.12057	4.13537
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039438 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top