TCONS_00039436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039436
Unique NameTCONS_00039436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039436 ID=TCONS_00039436|Name=TCONS_00039436|organism=Clytia hemisphaerica|type=transcript|length=309bp
ACATGCTGACTTTTTACCCATTCACCCTTCCTAAAAGGCCTAACTATAAC
ATTTTGGTGGCAATGAACAAATTTACTATATAAATAAAAGCAAGAACCAT
TTGGTTTGCTGCCTAAATTGTTGGCTGCAATGGAATGTCTTCAGTCCTCT
AgccctagtttctaatcctgatataggagatCAAGCTTTTAGACTGCAAT
GGCAAACCGTCTAAGCTTAAACTCTTATATCAGGATGAGAGGGCTTGTct
tgatgcaagagttagattgtcaacaaagtgccgtaaaaaatcattgaata
tataaaaga
Run BLAST on NCBI

transcript from alignment at sc0002106:26039..26347

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039436 ID=TCONS_00039436|Name=TCONS_00039436|organism=Clytia hemisphaerica|type=transcript|length=309bp|location=Sequence derived from alignment at sc0002106:26039..26347 (Clytia hemisphaerica)
tcttttatatattcaatgattttttacggcactttgttgacaatctaact
cttgcatcaagACAAGCCCTCTCATCCTGATATAAGAGTTTAAGCTTAGA
CGGTTTGCCATTGCAGTCTAAAAGCTTGatctcctatatcaggattagaa
actagggcTAGAGGACTGAAGACATTCCATTGCAGCCAACAATTTAGGCA
GCAAACCAAATGGTTCTTGCTTTTATTTATATAGTAAATTTGTTCATTGC
CACCAAAATGTTATAGTTAGGCCTTTTAGGAAGGGTGAATGGGTAAAAAG
TCAGCATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023796XLOC_023796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039436-exon-sc0002106-1491911889:26039..26347TCONS_00039436-exon-sc0002106-1491911889:26039..26347Clytia hemisphaericaexon
TCONS_00039436-exon-sc0002106-1510915933:26039..26347TCONS_00039436-exon-sc0002106-1510915933:26039..26347Clytia hemisphaericaexon
TCONS_00039436-exon-sc0002106-1575043694:26039..26347TCONS_00039436-exon-sc0002106-1575043694:26039..26347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002106supercontigsc0002106:26039..26347 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.38068	1.39417	0.478203	0.755765	0.462073	0.431891	0.907076	0	1.07107	2.02465	1.01412	1.64738	0.805423	1.52345	0.5324	0.708447	0	1.18336	1.15499	1.13072	0	0	0.380723	0	0.518661	0	0.919262	0.400999
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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